C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588745 SMAD4-004 ENSG00000141646 9606 + 18:51047047-51078467 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverMusclePlacentaTestisENST00000588745
Transcript ID Breast Colon Heart Liver Muscle Placenta Testis
ENST00000588745 5.760±0.00 9.147±0.00 5.038±0.00 11.815±0.00 4.510±0.00 7.745±0.00 5.197±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007179 IEA transforming growth factor beta receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114939 Smad4-002 protein_coding Mus_musculus 0 913
ENSMUST00000025393 Smad4-001 protein_coding Mus_musculus 0 913
ENSMUST00000147315 Smad4-006 processed_transcript Mus_musculus 4e-28 130

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