C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: death effector domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000595337 DEDD2-001 ENSG00000160570 9606 - 19:42198613-42220123 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000595337
Transcript ID Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000595337 2.652±0.00 1.592±0.00 3.161±0.00 1.512±0.00 14.906±0.00 4.089±0.00 3.577±0.00 3.956±0.00 6.289±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003X4 CIL_0003X4_0001 CGP 19:42086110-42220140
CIL_00028B CIL_00028B_0001 CGP 19:42198598-42228201

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006396 NAS RNA processing
GO:0008625 IMP extrinsic apoptotic signaling pathway via death domain receptors
GO:0016075 NAS rRNA catabolic process
GO:0019725 NAS cellular homeostasis
GO:0030159 NAS receptor signaling complex scaffold activity
GO:0030262 IDA apoptotic nuclear changes
GO:0035556 NAS intracellular signal transduction
GO:0042981 IEA regulation of apoptotic process
GO:0045892 NAS negative regulation of transcription, DNA-templated
GO:2001238 IMP positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058702 Dedd2-201 protein_coding Mus_musculus 0 1264

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