C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: opsin 1 (cone pigments), medium-wave-sensitive
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000596998 OPN1MW-002 ENSG00000268221 9606 + X:154190058-154196135 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GD CIL_0007GD_0002 CGP X:154144224-154196135
CIL_0007GD CIL_0007GD_0004 CGP X:154182596-154233286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004930 IEA G-protein coupled receptor activity
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000127445 Opn1mw-006 protein_coding Mus_musculus 0 641
ENSMUST00000101457 Opn1mw-002 protein_coding Mus_musculus 0 510
ENSMUST00000033771 Opn1mw-001 protein_coding Mus_musculus 0 510
ENSMUST00000145443 Opn1mw-004 processed_transcript Mus_musculus 0 296
ENSMUST00000123401 Opn1mw-005 processed_transcript Mus_musculus 0 226
ENSMUST00000135307 Opn1mw-003 processed_transcript Mus_musculus 0 226

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