C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033771 Opn1mw-001 ENSMUSG00000031394 10090 + X:74127464-74150760 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverMusclePlacentaENSMUST00000033771
Transcript ID Bladder Brain Breast Heart Kidney Liver Muscle Placenta
ENSMUST00000033771 0.011±0.00 0.030±0.03 0.183±0.08 0.011±0.00 0.026±0.01 0.008±0.00 0.117±0.06 0.013±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007GC CIL_0007GC_0003 CGP X:74013914-74135363
CIL_0001LD CIL_0001LD_0002 CGP X:74026592-74150760
CIL_00032W CIL_00032W_0002 CGP X:74127464-74167838

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001750 IDA photoreceptor outer segment
GO:0004930 IEA G-protein coupled receptor activity
GO:0005515 IPI protein binding
GO:0005886 ISS plasma membrane
GO:0007186 IEA G-protein coupled receptor signaling pathway
GO:0007601 IEA visual perception
GO:0007602 IEA phototransduction
GO:0009881 IEA photoreceptor activity
GO:0016021 IEA integral component of membrane
GO:0018298 IEA protein-chromophore linkage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369929 OPN1MW2-001 protein_coding Homo_sapiens 0 1266
ENST00000369951 OPN1LW-001 protein_coding Homo_sapiens 0 1254
ENST00000430419 OPN1MW2-002 protein_coding Homo_sapiens 0 510
ENST00000442922 OPN1LW-002 protein_coding Homo_sapiens 0 503
ENST00000463296 OPN1LW-003 processed_transcript Homo_sapiens 0 603
ENST00000488220 OPN1MW2-003 processed_transcript Homo_sapiens 0 614
ENST00000595290 OPN1MW-001 protein_coding Homo_sapiens 0 1242
ENST00000595330 OPN1MW-003 processed_transcript Homo_sapiens 0 614
ENST00000596998 OPN1MW-002 protein_coding Homo_sapiens 0 510
ENST00000599405 OPN1MW-001 protein_coding Homo_sapiens 0 1266

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