C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: BIVM-ERCC5 readthrough
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602836 BIVM-ERCC5-001 ENSG00000270181 9606 + 13:102807354-102872398 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverMuscleOvaryENST00000602836
Transcript ID Breast Colon Kidney Liver Muscle Ovary
ENST00000602836 1.615±0.00 2.159±0.00 1.515±0.00 1.576±0.00 0.630±0.00 1.491±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WG CIL_0000WG_0001 CGP 13:102784281-102841535
CIL_0000WF CIL_0000WF_0001 CGP 13:102799049-102872398

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003697 IEA single-stranded DNA binding
GO:0003824 IEA catalytic activity
GO:0004518 IEA nuclease activity
GO:0004519 IEA endonuclease activity
GO:0005634 IEA nucleus
GO:0006281 IEA DNA repair
GO:0006289 IEA nucleotide-excision repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114709 Bivm-001 protein_coding Mus_musculus 0 1624
ENSMUST00000035991 Bivm-002 protein_coding Mus_musculus 0 1624
ENSMUST00000131177 Ercc5-002 retained_intron Mus_musculus 0 1081
ENSMUST00000027214 Ercc5-001 protein_coding Mus_musculus 0 1081
ENSMUST00000137380 Ercc5-003 retained_intron Mus_musculus 0 754
ENSMUST00000155862 Ercc5-004 retained_intron Mus_musculus 0 632
ENSMUST00000139510 Ercc5-005 processed_transcript Mus_musculus 0 501

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