C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: excision repair cross-complementing rodent repair deficiency, complementation group 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027214 Ercc5-001 ENSMUSG00000026048 10090 + 1:44147847-44181260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027214
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027214 2.944±0.66 1.700±0.60 6.481±1.84 4.703±1.18 2.153±0.52 2.419±0.70 1.739±0.14 2.219±0.25 2.141±0.93 2.422±0.46 2.572±0.33 3.695±1.96 4.002±2.60 2.732±2.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000WF CIL_0000WF_0002 CGP 1:44118957-44181260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003697 IEA single-stranded DNA binding
GO:0004519 IEA endonuclease activity
GO:0005634 IEA nucleus
GO:0006281 IMP DNA repair
GO:0006289 IMP nucleotide-excision repair
GO:0008340 IMP determination of adult lifespan
GO:0009411 IMP response to UV
GO:0009650 IMP UV protection
GO:0035264 IMP multicellular organism growth
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355739 ERCC5-001 protein_coding Homo_sapiens 0 1157
ENST00000375954 ERCC5-006 protein_coding Homo_sapiens 0 859
ENST00000481099 ERCC5-004 retained_intron Homo_sapiens 0 516
ENST00000535557 ERCC5-201 protein_coding Homo_sapiens 0 725
ENST00000602836 BIVM-ERCC5-001 protein_coding Homo_sapiens 0 1081
ENST00000610537 ERCC5-202 protein_coding Homo_sapiens 0 1157

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