C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tyrosyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616261 YARS-201 ENSG00000134684 9606 - 1:32780251-32817244 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000616261
Transcript ID Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000616261 10.262±0.00 7.490±0.00 6.584±0.00 4.988±0.00 4.072±0.00 16.345±10.88 15.233±6.73 33.710±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0000166 IEA nucleotide binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004831 TAS:IEA tyrosine-tRNA ligase activity
GO:0004871 NAS signal transducer activity
GO:0005153 TAS interleukin-8 receptor binding
GO:0005524 IEA ATP binding
GO:0005615 TAS extracellular space
GO:0005634 IDA nucleus
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006437 IEA tyrosyl-tRNA aminoacylation
GO:0006915 TAS apoptotic process
GO:0007165 NAS signal transduction
GO:0010467 TAS gene expression
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106054 Yars-001 protein_coding Mus_musculus 0 1459
ENSMUST00000133992 Yars-003 nonsense_mediated_decay Mus_musculus 0 640
ENSMUST00000128287 Yars-008 retained_intron Mus_musculus 0 503
ENSMUST00000148619 Yars-002 retained_intron Mus_musculus 0 326
ENSMUST00000137591 Yars-007 processed_transcript Mus_musculus 0 324
ENSMUST00000146106 Yars-005 retained_intron Mus_musculus 0 296
ENSMUST00000147248 Yars-006 retained_intron Mus_musculus 0 289

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