C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: dehydrogenase/reductase (SDR family) member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000616661 DHRS3-001 ENSG00000162496 9606 - 1:12567910-12617731 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000616661
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000616661 98.372±0.00 26.838±0.00 14.341±0.00 5.301±1.71 48.814±38.22 16.353±8.21 8.741±5.52 29.484±7.97 39.567±21.61 19.643±7.38 14.404±8.59 32.283±21.86 44.815±12.70 17.438±0.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000230 CIL_000230_0002 CGP 1:12567910-12667086

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 TAS nucleotide binding
GO:0001523 TAS retinoid metabolic process
GO:0003151 IEA outflow tract morphogenesis
GO:0004745 IEA retinol dehydrogenase activity
GO:0007601 TAS visual perception
GO:0007603 TAS phototransduction, visible light
GO:0008152 IEA metabolic process
GO:0009055 TAS electron carrier activity
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0030278 IEA regulation of ossification
GO:0042572 TAS retinol metabolic process
GO:0042622 TAS photoreceptor outer segment membrane
GO:0048387 IEA negative regulation of retinoic acid receptor signaling pathway
GO:0052650 IEA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process
GO:0060021 IEA palate development
GO:0060349 IEA bone morphogenesis
GO:0060411 IEA cardiac septum morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000154208 Dhrs3-001 protein_coding Mus_musculus 0 1421
ENSMUST00000171001 Dhrs3-201 protein_coding Mus_musculus 0 1227
ENSMUST00000084184 Dhrs3-003 nonsense_mediated_decay Mus_musculus 0 894
ENSMUST00000105744 Dhrs3-002 protein_coding Mus_musculus 0 726
ENSMUST00000142808 Dhrs3-004 protein_coding Mus_musculus 0 566
ENSMUST00000133265 Dhrs3-006 retained_intron Mus_musculus 0 326
ENSMUST00000128926 Dhrs3-005 processed_transcript Mus_musculus 0 326

Loading