C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group E, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617575 NR2E3-001 ENSG00000278570 9606 + 15:71810554-71818259 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000617575
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000617575 0.063±0.00 0.137±0.00 0.163±0.00 0.122±0.00 0.157±0.00 0.127±0.00 0.191±0.00 0.017±0.00 0.139±0.00 0.025±0.00 0.061±0.02 0.145±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 TAS:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0007601 IEA visual perception
GO:0007602 TAS phototransduction
GO:0008270 IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0010467 TAS gene expression
GO:0030522 TAS intracellular receptor signaling pathway
GO:0042462 IEA eye photoreceptor cell development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045872 IEA positive regulation of rhodopsin gene expression
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0060041 IEA retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034831 Nr2e3-001 protein_coding Mus_musculus 0 1074
ENSMUST00000156845 Nr2e3-002 retained_intron Mus_musculus 0 725
ENSMUST00000128060 Nr2e3-005 retained_intron Mus_musculus 0 725
ENSMUST00000130831 Nr2e3-004 retained_intron Mus_musculus 0 725
ENSMUST00000147892 Nr2e3-007 processed_transcript Mus_musculus 0 604
ENSMUST00000144391 Nr2e3-008 retained_intron Mus_musculus 0 435
ENSMUST00000128108 Nr2e3-003 retained_intron Mus_musculus 0 431
ENSMUST00000143377 Nr2e3-009 processed_transcript Mus_musculus 0 224
ENSMUST00000138888 Nr2e3-006 retained_intron Mus_musculus 3.00004e-41 174
ENSMUST00000064392 Olfr536-201 protein_coding Mus_musculus 0.0001 53

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