C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox 8a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000002330 lhx8a 7955 + 2:10997100-11001473 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000019078 lhx8a-001 10997100-11001473 protein_coding
  ENSDART00000132313 lhx8a-003 10999768-11000987 retained_intron
  ENSDART00000144982 lhx8a-002 10997622-11000053 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000019078ENSDART00000132313ENSDART00000144982
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000019078 0.807±0.54 0.115±0.00 4.343±0.75 0.234±0.00 0.044±0.00
ENSDART00000132313 0.353±0.20 0.117±0.00 N/A 0.212±0.00 N/A
ENSDART00000144982 N/A 0.122±0.00 N/A 0.114±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000037 CIL_000037_0001 CGP 2:10910620-11001473
CIL_00003C CIL_00003C_0001 CGP 2:10997100-11259959

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000162624 LHX8 LIM homeobox 8 protein_coding Homo_sapiens
ENSMUSG00000096225 Lhx8 LIM homeobox protein 8 protein_coding Mus_musculus

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