C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox protein 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000096225 Lhx8 10090 - 3:154306294-154330561 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000167744 Lhx8-002 154322257-154328634 protein_coding
  ENSMUST00000168508 Lhx8-005 154316743-154324883 retained_intron
  ENSMUST00000169671 Lhx8-004 154306978-154328166 nonsense_mediated_decay
  ENSMUST00000176163 Lhx8-003 154306296-154330059 protein_coding
  ENSMUST00000177846 Lhx8-001 154306294-154330561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167744ENSMUST00000168508ENSMUST00000169671ENSMUST00000176163ENSMUST00000177846
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167744 N/A 0.229±0.12 1.473±0.00 0.234±0.00 0.078±0.00 0.132±0.01 0.079±0.00 0.017±0.00 0.051±0.00 N/A 1.576±1.08 0.161±0.07 0.199±0.00
ENSMUST00000168508 N/A N/A N/A N/A 0.091±0.00 N/A N/A 0.009±0.00 N/A 0.015±0.00 0.929±0.50 0.201±0.11 0.254±0.00
ENSMUST00000169671 N/A 0.355±0.00 1.528±0.52 1.472±1.13 N/A 0.040±0.00 N/A 0.020±0.00 0.247±0.00 0.145±0.00 1.797±1.79 0.717±0.70 0.208±0.00
ENSMUST00000176163 N/A 0.065±0.00 0.178±0.00 N/A 0.081±0.00 0.045±0.01 0.021±0.00 0.032±0.00 0.186±0.00 0.029±0.00 N/A 0.130±0.06 N/A
ENSMUST00000177846 0.034±0.00 0.120±0.02 2.010±1.78 0.913±0.11 0.043±0.00 N/A 0.119±0.06 0.020±0.01 0.043±0.03 0.099±0.00 0.618±0.20 0.013±0.00 0.277±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047K CIL_00047K_0002 CGP 3:153973436-154330561

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001674 IDA female germ cell nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007611 IMP learning or memory
GO:0008270 IEA zinc ion binding
GO:0008585 IMP female gonad development
GO:0021879 IMP forebrain neuron differentiation
GO:0021884 IGI forebrain neuron development
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002330 lhx8a LIM homeobox 8a protein_coding Danio_rerio
ENSDARG00000042145 lhx8b LIM homeobox 8b protein_coding Danio_rerio
ENSG00000162624 LHX8 LIM homeobox 8 protein_coding Homo_sapiens

Loading