C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162624 LHX8 9606 + 1:75128434-75161533 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294638 LHX8-001 75128434-75161533 protein_coding
  ENST00000356261 LHX8-002 75134882-75161533 protein_coding
  ENST00000607240 LHX8-004 75159288-75161531 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENST00000294638ENST00000356261ENST00000607240
Transcript ID Brain Kidney Ovary Placenta Testis
ENST00000294638 N/A N/A N/A N/A 0.167±0.06
ENST00000356261 0.006±0.00 0.042±0.00 0.063±0.04 N/A 0.435±0.16
ENST00000607240 N/A N/A N/A 0.015±0.00 0.197±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000037 CIL_000037_0002 CGP 1:74733152-75161533
CIL_00003C CIL_00003C_0002 CGP 1:75128434-75611116

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001674 IEA female germ cell nucleus
GO:0003677 IEA DNA binding
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007611 IEA learning or memory
GO:0008270 IEA zinc ion binding
GO:0008585 IEA female gonad development
GO:0021879 IEA forebrain neuron differentiation
GO:0021884 IEA forebrain neuron development
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002330 lhx8a LIM homeobox 8a protein_coding Danio_rerio
ENSDARG00000042145 lhx8b LIM homeobox 8b protein_coding Danio_rerio
ENSMUSG00000096225 Lhx8 LIM homeobox protein 8 protein_coding Mus_musculus

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