C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000003813 srp54 7955 - 17:10511332-10526998 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000018678 srp54-201 10511337-10526998 protein_coding
  ENSDART00000131794 srp54-002 10516777-10517662 retained_intron
  ENSDART00000133424 srp54-001 10511332-10526998 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000018678ENSDART00000133424
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000018678 8.133±4.90 4.733±3.01 12.147±4.19 3.742±0.00 7.061±0.00
ENSDART00000133424 8.246±3.31 9.654±6.13 7.847±6.22 1.041±0.00 10.434±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000100883 SRP54 signal recognition particle 54kDa protein_coding Homo_sapiens
ENSMUSG00000073079 Srp54a signal recognition particle 54A protein_coding Mus_musculus
ENSMUSG00000079108 Srp54b signal recognition particle 54B protein_coding Mus_musculus

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