C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000018678 srp54-201 ENSDARG00000003813 7955 - 17:10511337-10526998 protein_coding

Danio rerio EnsemblZv9

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Genes
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000018678
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000018678 8.133±4.90 4.733±3.01 12.147±4.19 3.742±0.00 7.061±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0017111 IEA nucleoside-triphosphatase activity
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021407 Srp54a-201 protein_coding Mus_musculus 0 1149
ENSMUST00000110708 Srp54b-201 protein_coding Mus_musculus 0 1149
ENSMUST00000164243 Srp54b-202 protein_coding Mus_musculus 0 1144
ENST00000216774 SRP54-201 protein_coding Homo_sapiens 0 1122
ENST00000546080 SRP54-202 protein_coding Homo_sapiens 0 1005
ENST00000555557 SRP54-002 protein_coding Homo_sapiens 0 1005
ENST00000556992 SRP54-013 retained_intron Homo_sapiens 0 204
ENST00000556994 SRP54-001 protein_coding Homo_sapiens 0 1122

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