C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 54B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000079108 Srp54b 10090 + 12:55155104-55263020 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000110708 Srp54b-201 55155104-55189213 protein_coding
  ENSMUST00000164243 Srp54b-202 55239326-55263020 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110708ENSMUST00000164243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110708 11.551±3.58 51.744±9.10 17.544±11.26 11.205±9.43 12.057±8.17 13.543±9.07 9.170±1.68 6.694±2.65 12.402±8.85 11.824±7.30 4.609±0.60 19.082±13.17 4.034±3.04 8.101±4.16
ENSMUST00000164243 1.397±0.23 0.334±0.19 18.224±11.95 13.439±7.57 0.640±0.32 0.576±0.34 1.448±0.11 0.890±0.25 7.289±12.12 1.262±0.24 3.597±0.57 1.966±2.99 8.249±2.61 5.243±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045L CIL_00045L_0003 CGP 12:55155104-55263020

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006184 IEA GTP catabolic process
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008150 ND biological_process
GO:0008312 IEA 7S RNA binding
GO:0048500 IEA signal recognition particle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003813 srp54 signal recognition particle 54 protein_coding Danio_rerio
ENSG00000100883 SRP54 signal recognition particle 54kDa protein_coding Homo_sapiens

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