C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U6 snRNA biogenesis 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000003841 usb1 7955 + 25:14109371-14118870 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000007029 usb1-201 14109371-14118870 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000007029
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000007029 1.931±0.86 1.965±0.71 1.839±0.79 0.274±0.00 0.951±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052C CIL_00052C_0001 CGP 25:14104658-14118870

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 ISS 3'-5'-exoribonuclease activity
GO:0003824 IEA catalytic activity
GO:0004518 IEA nuclease activity
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016787 IEA hydrolase activity
GO:0034477 IEA U6 snRNA 3'-end processing
GO:0090305 ISS nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000103005 USB1 U6 snRNA biogenesis 1 protein_coding Homo_sapiens
ENSMUSG00000031792 Usb1 U6 snRNA biogenesis 1 protein_coding Mus_musculus

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