C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U6 snRNA biogenesis 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031792 Usb1 10090 + 8:95332292-95347507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034245 Usb1-001 95332292-95347507 protein_coding
  ENSMUST00000126180 Usb1-002 95332596-95343165 protein_coding
  ENSMUST00000145060 Usb1-003 95332325-95344281 retained_intron
  ENSMUST00000151223 Usb1-004 95345154-95346834 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034245ENSMUST00000145060ENSMUST00000151223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034245 12.316±2.66 10.924±0.89 16.430±3.36 14.608±2.94 11.112±3.59 15.951±3.70 8.282±0.42 10.927±0.88 8.010±1.28 14.396±0.57 2.359±0.32 17.206±4.27 18.342±9.48 12.495±5.99
ENSMUST00000145060 N/A N/A N/A N/A N/A 3.855±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.527±0.00 4.412±0.00 N/A 1.535±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_00052C CIL_00052C_0003 CGP 8:95326137-95347507
CIL_0004RY CIL_0004RY_0002 CGP 8:95332292-95374293

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 ISS 3'-5'-exoribonuclease activity
GO:0005634 ISS nucleus
GO:0006397 IEA mRNA processing
GO:0008380 ISS RNA splicing
GO:0034477 IEA:ISS U6 snRNA 3'-end processing
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003841 usb1 U6 snRNA biogenesis 1 protein_coding Danio_rerio
ENSG00000103005 USB1 U6 snRNA biogenesis 1 protein_coding Homo_sapiens

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