C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: U6 snRNA biogenesis 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000103005 USB1 9606 + 16:57999546-58021618 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000219281 USB1-001 58001373-58021618 protein_coding
  ENST00000423271 USB1-004 58001407-58011708 protein_coding
  ENST00000539737 USB1-002 58001405-58020634 protein_coding
  ENST00000561568 USB1-014 58001407-58017417 protein_coding
  ENST00000561743 USB1-012 57999546-58020542 protein_coding
  ENST00000562534 USB1-018 58001416-58017440 processed_transcript
  ENST00000563149 USB1-003 58001420-58013558 protein_coding
  ENST00000563207 USB1-013 58001424-58017418 processed_transcript
  ENST00000564387 USB1-015 58001421-58017380 nonsense_mediated_decay
  ENST00000565151 USB1-011 58013629-58019053 retained_intron
  ENST00000565662 USB1-017 58001407-58019036 processed_transcript
  ENST00000566082 USB1-005 58015113-58021617 retained_intron
  ENST00000566292 USB1-010 58001416-58010170 retained_intron
  ENST00000568848 USB1-009 58001419-58011475 processed_transcript
  ENST00000569252 USB1-016 58001416-58014310 processed_transcript
  ENST00000624720 USB1-006 58010663-58013557 TEC

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000219281ENST00000423271ENST00000539737ENST00000561743ENST00000562534ENST00000563207ENST00000566082ENST00000624720
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000219281 13.402±0.00 13.475±0.00 N/A 8.652±0.00 13.011±0.00 6.299±5.71 2.894±2.75 10.184±0.00 7.108±0.00 11.637±0.00 4.733±0.00 12.618±4.78 13.285±0.55 12.258±1.23
ENST00000423271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.231±0.00 N/A N/A
ENST00000539737 N/A N/A N/A N/A 0.862±0.00 N/A N/A 0.468±0.00 0.920±0.00 N/A N/A N/A N/A N/A
ENST00000561743 N/A N/A 0.460±0.00 0.982±0.00 N/A N/A N/A N/A N/A 0.498±0.00 N/A N/A N/A N/A
ENST00000562534 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.659±0.00 N/A N/A N/A N/A
ENST00000563207 N/A N/A N/A N/A N/A N/A N/A 0.262±0.00 N/A N/A N/A N/A N/A N/A
ENST00000566082 N/A 2.528±0.00 0.126±0.00 0.821±0.65 N/A 0.191±0.00 0.107±0.00 0.115±0.00 0.158±0.00 0.459±0.00 N/A 2.094±0.00 N/A 4.129±0.00
ENST00000624720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.180±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0001 VISTA 16:57818949-58421282
CIL_00052C CIL_00052C_0002 CGP 16:57994668-58021618
CIL_0004RY CIL_0004RY_0001 CGP 16:57999546-58046901

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000175 IDA 3'-5'-exoribonuclease activity
GO:0004518 IEA nuclease activity
GO:0005634 IEA:IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA:IMP RNA splicing
GO:0034477 IEA:IMP U6 snRNA 3'-end processing
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis
GO:0090503 IDA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003841 usb1 U6 snRNA biogenesis 1 protein_coding Danio_rerio
ENSMUSG00000031792 Usb1 U6 snRNA biogenesis 1 protein_coding Mus_musculus

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