C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulon 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000006497 rtn1a 7955 - 13:31648189-31694041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000057441 rtn1a-201 31648194-31664542 protein_coding
  ENSDART00000057445 rtn1a-202 31648992-31694041 protein_coding
  ENSDART00000076548 rtn1a-203 31648992-31694041 protein_coding
  ENSDART00000076571 rtn1a-002 31648189-31664644 protein_coding
  ENSDART00000076574 rtn1a-003 31648196-31694041 protein_coding
  ENSDART00000126860 rtn1a-001 31648192-31664542 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000057441ENSDART00000076571ENSDART00000076574ENSDART00000126860
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000057441 398.869±5.49 12.483±6.33 13.767±0.00 N/A N/A
ENSDART00000076571 362.165±3.73 92.543±19.31 47.492±19.60 33.145±0.00 52.614±0.00
ENSDART00000076574 154.554±6.82 10.141±0.24 N/A N/A 10.751±0.00
ENSDART00000126860 135.511±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZY CIL_0005ZY_0001 CGP 13:31648189-31737752

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000139970 RTN1 reticulon 1 protein_coding Homo_sapiens
ENSMUSG00000021087 Rtn1 reticulon 1 protein_coding Mus_musculus

Loading