C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulon 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021087 Rtn1 10090 - 12:72211752-72409054 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000021497 Rtn1-201 72211753-72236724 protein_coding
  ENSMUST00000078505 Rtn1-001 72211752-72409054 protein_coding
  ENSMUST00000137990 Rtn1-003 72212289-72236724 protein_coding
  ENSMUST00000144181 Rtn1-004 72223233-72236686 processed_transcript
  ENSMUST00000150156 Rtn1-002 72211752-72235739 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021497ENSMUST00000078505ENSMUST00000137990ENSMUST00000150156
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021497 N/A 2.062±0.72 0.559±0.12 258.757±118.16 0.998±0.04 3.543±0.34 0.840±0.07 1.001±0.47 0.627±0.47 N/A N/A N/A 1.475±0.00 N/A
ENSMUST00000078505 0.747±0.24 2.413±0.24 0.659±0.09 42.800±11.93 2.239±0.56 1.513±0.28 0.456±0.14 1.061±0.18 0.335±0.12 3.850±0.23 0.125±0.04 11.955±2.83 9.376±5.93 7.184±1.32
ENSMUST00000137990 0.469±0.13 5.258±2.78 0.367±0.00 229.385±9.39 N/A 3.485±0.49 0.951±0.63 1.553±0.00 1.049±0.00 N/A 0.142±0.00 N/A N/A N/A
ENSMUST00000150156 N/A N/A N/A N/A 1.691±0.00 N/A N/A N/A 0.341±0.15 N/A 0.242±0.11 3.260±0.03 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S5 CIL_0000S5_0002 CGP 12:72101292-72409054
CIL_0005ZY CIL_0005ZY_0003 CGP 12:72211752-72514334

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030182 IEA neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006497 rtn1a reticulon 1a protein_coding Danio_rerio
ENSDARG00000021143 rtn1b reticulon 1b protein_coding Danio_rerio
ENSG00000139970 RTN1 reticulon 1 protein_coding Homo_sapiens

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