C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005ZY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006497-ENSDARG00000054352 CGP 7955 13:31648189-31737752
GeneTranscriptPositionBiotype
ENSDARG00000006497 (rtn1a)
reticulon 1a 		ENSDART00000057441 (rtn1a-201) 31648194-31664542 protein_coding
ENSDART00000057445 (rtn1a-202) 31648992-31694041 protein_coding
ENSDART00000076548 (rtn1a-203) 31648992-31694041 protein_coding
ENSDART00000076571 (rtn1a-002) 31648189-31664644 protein_coding
ENSDART00000076574 (rtn1a-003) 31648196-31694041 protein_coding
ENSDART00000126860 (rtn1a-001) 31648192-31664542 nonsense_mediated_decay
ENSDARG00000054352 (lrrc9)
leucine rich repeat containing 9 		ENSDART00000076533 (lrrc9-201) 31697490-31720809 protein_coding
ENSDART00000114995 (lrrc9-202) 31697490-31720809 protein_coding
ENSDART00000141217 (lrrc9-003) 31696792-31703403 protein_coding
ENSDART00000146752 (lrrc9-002) 31720838-31737752 protein_coding
ENSDART00000148112 (lrrc9-001) 31703416-31717889 protein_coding
CIL_0005ZY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000139970-ENSG00000131951 CGP 9606 14:59595976-60063559
GeneTranscriptPositionBiotype
ENSG00000131951 (LRRC9)
leucine rich repeat containing 9 		ENST00000254271 (LRRC9-002) 59919713-60063559 nonsense_mediated_decay
ENST00000445360 (LRRC9-001) 59919713-60063559 protein_coding
ENST00000454474 (LRRC9-004) 59919781-59959979 processed_transcript
ENST00000562571 (LRRC9-006) 60003637-60006748 retained_intron
ENST00000568404 (LRRC9-003) 60028056-60063406 nonsense_mediated_decay
ENST00000570145 (LRRC9-005) 59920149-59930992 protein_coding
ENSG00000139970 (RTN1)
reticulon 1 		ENST00000267484 (RTN1-001) 59595977-59870966 protein_coding
ENST00000342503 (RTN1-002) 59595977-59630814 protein_coding
ENST00000395090 (RTN1-003) 59595977-59630609 protein_coding
ENST00000432103 (RTN1-009) 59596005-59727713 retained_intron
ENST00000474911 (RTN1-004) 59596014-59607607 retained_intron
ENST00000481205 (RTN1-005) 59595976-59606102 retained_intron
ENST00000490111 (RTN1-006) 59603761-59605509 retained_intron
ENST00000557422 (RTN1-008) 59596757-59630612 processed_transcript
ENST00000611068 (RTN1-201) 59596328-59870752 protein_coding
ENSG00000258553 (RP11-16B13.1)
 ENST00000554123 (RP11-16B13.1-001) 59969116-60091783 antisense
ENST00000555432 (RP11-16B13.1-002) 59969116-60057651 antisense
ENSG00000261120 (RP11-62H20.1)
 ENST00000565968 (RP11-62H20.1-001) 59919423-59920339 antisense
CIL_0005ZY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021087-ENSMUSG00000021090 CGP 10090 12:72211752-72514334
GeneTranscriptPositionBiotype
ENSMUSG00000021087 (Rtn1)
reticulon 1 		ENSMUST00000021497 (Rtn1-201) 72211753-72236724 protein_coding
ENSMUST00000078505 (Rtn1-001) 72211752-72409054 protein_coding
ENSMUST00000137990 (Rtn1-003) 72212289-72236724 protein_coding
ENSMUST00000144181 (Rtn1-004) 72223233-72236686 processed_transcript
ENSMUST00000150156 (Rtn1-002) 72211752-72235739 processed_transcript
ENSMUSG00000021090 (Lrrc9)
leucine rich repeat containing 9 		ENSMUST00000160394 (Lrrc9-004) 72442242-72454766 retained_intron
ENSMUST00000161195 (Lrrc9-006) 72442035-72514334 processed_transcript
ENSMUST00000161284 (Lrrc9-002) 72441933-72497239 protein_coding
ENSMUST00000161547 (Lrrc9-007) 72476074-72477661 retained_intron
ENSMUST00000161957 (Lrrc9-005) 72442249-72474210 retained_intron
ENSMUST00000162159 (Lrrc9-001) 72441866-72510565 protein_coding
ENSMUST00000162179 (Lrrc9-003) 72441949-72467526 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZY_0001ENSDARG00000006497ENSDART00000057441ENSDART00000057445ENSDART00000076548ENSDART00000076571ENSDART00000076574ENSDART00000126860ENSDARG00000054352ENSDART00000076533ENSDART00000114995ENSDART00000141217ENSDART00000146752ENSDART00000148112CIL_0005ZY_0002ENSG00000131951ENST00000254271ENST00000445360ENST00000454474ENST00000562571ENST00000568404ENST00000570145ENSG00000139970ENST00000267484ENST00000342503ENST00000395090ENST00000432103ENST00000474911ENST00000481205ENST00000490111ENST00000557422ENST00000611068ENSG00000258553ENST00000554123ENST00000555432ENSG00000261120ENST00000565968CIL_0005ZY_0003ENSMUSG00000021087ENSMUST00000021497ENSMUST00000078505ENSMUST00000137990ENSMUST00000144181ENSMUST00000150156ENSMUSG00000021090ENSMUST00000160394ENSMUST00000161195ENSMUST00000161284ENSMUST00000161547ENSMUST00000161957ENSMUST00000162159ENSMUST00000162179
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005ZY_0001ENSDARG00000006497ENSDART00000057441ENSDART00000076571ENSDART00000076574ENSDART00000126860ENSDARG00000054352ENSDART00000076533ENSDART00000114995ENSDART00000141217ENSDART00000146752ENSDART00000148112CIL_0005ZY_0002ENSG00000131951ENST00000254271ENST00000445360ENST00000454474ENST00000562571ENST00000568404ENST00000570145ENSG00000139970ENST00000267484ENST00000342503ENST00000432103ENST00000474911ENST00000481205ENST00000557422ENST00000611068ENSG00000258553ENST00000554123ENST00000555432ENSG00000261120ENST00000565968CIL_0005ZY_0003ENSMUSG00000021087ENSMUST00000021497ENSMUST00000078505ENSMUST00000137990ENSMUST00000150156ENSMUSG00000021090ENSMUST00000160394ENSMUST00000161195ENSMUST00000161284ENSMUST00000161547ENSMUST00000161957ENSMUST00000162159ENSMUST00000162179
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000006497 ENSDART00000057441 N/A N/A N/A 398.869±5.49 N/A N/A 12.483±6.33 13.767±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000057445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000076548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000076571 N/A N/A N/A 362.165±3.73 N/A N/A 92.543±19.31 47.492±19.60 33.145±0.00 N/A 52.614±0.00 N/A N/A N/A
ENSDART00000076574 N/A N/A N/A 154.554±6.82 N/A N/A 10.141±0.24 N/A N/A N/A 10.751±0.00 N/A N/A N/A
ENSDART00000126860 N/A N/A N/A 135.511±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000054352 ENSDART00000076533 N/A N/A N/A 0.075±0.03 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000114995 N/A N/A N/A N/A N/A N/A 0.062±0.01 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141217 N/A N/A N/A 0.117±0.06 N/A N/A N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A
ENSDART00000146752 N/A N/A N/A 0.426±0.23 N/A N/A 0.468±0.12 N/A 0.059±0.00 N/A 0.048±0.00 N/A N/A N/A
ENSDART00000148112 N/A N/A N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A 0.142±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131951 ENST00000254271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.00 N/A 0.334±0.00
ENST00000445360 N/A N/A N/A N/A 0.009±0.00 0.013±0.00 0.012±0.00 0.002±0.00 0.020±0.02 N/A N/A 0.014±0.01 N/A 1.095±0.00
ENST00000454474 N/A N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.191±0.00 N/A N/A N/A N/A
ENST00000562571 N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A N/A N/A 0.369±0.31 N/A N/A
ENST00000568404 0.014±0.00 N/A N/A N/A N/A N/A 0.037±0.02 0.054±0.00 N/A 0.216±0.14 N/A N/A N/A N/A
ENST00000570145 N/A N/A N/A 0.350±0.00 N/A N/A N/A N/A N/A 0.158±0.00 N/A 0.184±0.00 N/A N/A
ENSG00000139970 ENST00000267484 1.585±0.00 N/A 0.140±0.00 21.548±0.00 2.039±0.00 N/A 0.103±0.04 0.287±0.00 0.762±0.00 0.607±0.00 0.405±0.00 2.176±0.00 0.560±0.00 1.071±0.00
ENST00000342503 N/A N/A N/A 115.105±75.69 N/A 3.861±0.00 0.092±0.00 N/A N/A N/A N/A N/A 0.959±0.00 N/A
ENST00000395090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432103 7.608±0.00 1.902±0.00 0.383±0.00 N/A 1.676±0.00 0.736±0.00 0.105±0.00 0.410±0.00 0.085±0.00 1.041±0.00 N/A N/A 0.715±0.33 N/A
ENST00000474911 N/A 0.891±0.00 N/A 84.349±23.62 N/A 1.078±0.08 N/A N/A N/A N/A 0.034±0.00 0.299±0.12 N/A 1.243±0.39
ENST00000481205 N/A N/A N/A N/A N/A N/A N/A N/A 0.127±0.00 N/A N/A N/A N/A N/A
ENST00000490111 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.383±0.00 0.309±0.00 N/A N/A
ENST00000611068 8.855±0.00 3.018±0.00 N/A 55.367±0.00 4.047±0.00 1.545±0.00 0.234±0.00 0.746±0.06 N/A 1.634±0.95 N/A 0.912±0.82 1.567±0.44 0.935±0.19
ENSG00000258553 ENST00000554123 N/A N/A N/A N/A N/A N/A N/A N/A 0.475±0.00 N/A N/A N/A N/A 0.649±0.18
ENST00000555432 N/A N/A 0.116±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A
ENSG00000261120 ENST00000565968 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.282±0.00 N/A 0.152±0.01 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021087 ENSMUST00000021497 N/A 2.062±0.72 0.559±0.12 258.757±118.16 0.998±0.04 3.543±0.34 0.840±0.07 1.001±0.47 0.627±0.47 N/A N/A N/A 1.475±0.00 N/A
ENSMUST00000078505 0.747±0.24 2.413±0.24 0.659±0.09 42.800±11.93 2.239±0.56 1.513±0.28 0.456±0.14 1.061±0.18 0.335±0.12 3.850±0.23 0.125±0.04 11.955±2.83 9.376±5.93 7.184±1.32
ENSMUST00000137990 0.469±0.13 5.258±2.78 0.367±0.00 229.385±9.39 N/A 3.485±0.49 0.951±0.63 1.553±0.00 1.049±0.00 N/A 0.142±0.00 N/A N/A N/A
ENSMUST00000144181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150156 N/A N/A N/A N/A 1.691±0.00 N/A N/A N/A 0.341±0.15 N/A 0.242±0.11 3.260±0.03 N/A N/A
ENSMUSG00000021090 ENSMUST00000160394 N/A 0.143±0.00 N/A N/A N/A N/A 0.036±0.00 N/A N/A 0.169±0.00 N/A N/A N/A N/A
ENSMUST00000161195 0.172±0.03 0.215±0.09 N/A 0.116±0.00 0.160±0.08 N/A 0.021±0.00 0.029±0.00 N/A 0.109±0.00 N/A 0.272±0.11 0.048±0.02 N/A
ENSMUST00000161284 0.086±0.00 0.265±0.16 0.009±0.00 0.194±0.00 0.176±0.08 0.042±0.01 N/A 0.013±0.00 0.026±0.01 0.091±0.00 0.032±0.00 0.210±0.07 0.072±0.00 20.005±10.58
ENSMUST00000161547 N/A 0.501±0.20 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A
ENSMUST00000161957 N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A 0.013±0.00 N/A N/A N/A 0.039±0.02 N/A
ENSMUST00000162159 0.084±0.00 0.136±0.00 0.012±0.00 N/A 0.262±0.13 N/A 0.025±0.01 0.033±0.01 0.016±0.01 N/A 0.006±0.00 0.343±0.15 N/A 13.716±1.63
ENSMUST00000162179 N/A 0.065±0.00 N/A N/A N/A N/A 0.017±0.00 N/A 0.025±0.01 N/A 0.018±0.00 N/A 0.068±0.03 N/A

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