C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000008188 sf1 7955 + 7:23976996-23987907 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000020212 sf1-002 23977039-23987907 nonsense_mediated_decay
  ENSDART00000126037 sf1-001 23977029-23987907 protein_coding
  ENSDART00000139321 sf1-004 23984363-23986088 retained_intron
  ENSDART00000143455 sf1-003 23976996-23983573 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000020212ENSDART00000126037
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000020212 15.844±11.03 14.085±10.31 34.123±6.82 1.361±0.00 2.942±0.00
ENSDART00000126037 17.327±6.83 5.955±0.91 5.225±0.00 N/A 1.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0001 CGP 7:23976996-24019264

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0008270 IEA zinc ion binding
GO:0060041 IMP retina development in camera-type eye

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000168066 SF1 splicing factor 1 protein_coding Homo_sapiens
ENSMUSG00000024949 Sf1 splicing factor 1 protein_coding Mus_musculus

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