C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168066 SF1 9606 - 11:64764606-64778786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000227503 SF1-002 64764606-64778747 protein_coding
  ENST00000334944 SF1-001 64764606-64778786 protein_coding
  ENST00000377387 SF1-006 64764606-64778469 protein_coding
  ENST00000377390 SF1-005 64764606-64778730 protein_coding
  ENST00000377394 SF1-004 64764606-64778747 protein_coding
  ENST00000413725 SF1-019 64765604-64767617 protein_coding
  ENST00000413951 SF1-011 64770297-64778507 nonsense_mediated_decay
  ENST00000432725 SF1-018 64770380-64777761 protein_coding
  ENST00000433274 SF1-016 64765652-64777760 protein_coding
  ENST00000443908 SF1-014 64765290-64767844 protein_coding
  ENST00000448404 SF1-003 64764606-64778747 nonsense_mediated_decay
  ENST00000463343 SF1-007 64776046-64778763 retained_intron
  ENST00000472725 SF1-010 64776046-64778037 retained_intron
  ENST00000477596 SF1-015 64766414-64767646 retained_intron
  ENST00000482693 SF1-012 64773023-64778504 retained_intron
  ENST00000486867 SF1-020 64766021-64769071 protein_coding
  ENST00000486960 SF1-009 64769278-64770639 retained_intron
  ENST00000489544 SF1-017 64768171-64769669 processed_transcript
  ENST00000496969 SF1-013 64769542-64771607 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000227503ENST00000334944ENST00000377387ENST00000377390ENST00000482693ENST00000486960ENST00000489544
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000227503 31.773±0.00 N/A N/A 9.534±6.79 N/A 18.030±0.00 6.774±0.00 11.466±8.40 5.585±1.65 14.640±0.00 3.063±0.00 50.272±19.65 33.934±11.14 51.544±1.36
ENST00000334944 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.522±0.00 42.796±0.00
ENST00000377387 N/A N/A N/A N/A 21.486±0.00 N/A N/A 12.113±0.00 N/A 9.889±0.00 N/A N/A N/A 24.884±0.00
ENST00000377390 15.388±0.00 44.343±0.00 N/A 9.990±7.66 16.174±0.00 16.668±0.00 3.303±2.48 10.830±0.00 8.041±5.71 10.996±8.20 29.064±0.00 35.110±19.00 38.703±8.96 36.611±3.18
ENST00000482693 N/A N/A N/A N/A N/A N/A 2.065±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486960 N/A N/A 11.932±0.00 5.657±0.00 N/A N/A N/A 4.981±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489544 N/A N/A N/A 50.095±0.00 N/A N/A N/A 5.486±0.00 N/A N/A N/A 48.367±0.00 N/A 74.907±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000389 TAS mRNA 3'-splice site recognition
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003714 TAS transcription corepressor activity
GO:0003723 TAS:IEA RNA binding
GO:0005634 IDA nucleus
GO:0005681 IDA spliceosomal complex
GO:0005840 NAS ribosome
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0030238 IEA male sex determination
GO:0033327 IEA Leydig cell differentiation
GO:0044822 IDA poly(A) RNA binding
GO:0048662 IEA negative regulation of smooth muscle cell proliferation
GO:0050810 IEA regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008188 sf1 splicing factor 1 protein_coding Danio_rerio
ENSMUSG00000024949 Sf1 splicing factor 1 protein_coding Mus_musculus

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