C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: splicing factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024949 Sf1 10090 + 19:6363690-6378030 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113485 Sf1-012 6363922-6377202 nonsense_mediated_decay
  ENSMUST00000113487 Sf1-001 6363922-6377196 protein_coding
  ENSMUST00000113488 Sf1-003 6363810-6376512 protein_coding
  ENSMUST00000113489 Sf1-013 6363719-6377203 protein_coding
  ENSMUST00000124667 Sf1-014 6374010-6376512 protein_coding
  ENSMUST00000125516 Sf1-008 6373621-6376654 protein_coding
  ENSMUST00000131083 Sf1-004 6363922-6365955 retained_intron
  ENSMUST00000131252 Sf1-002 6363690-6378030 protein_coding
  ENSMUST00000131677 Sf1-007 6372413-6372921 retained_intron
  ENSMUST00000144239 Sf1-006 6370712-6371694 retained_intron
  ENSMUST00000144409 Sf1-009 6364194-6372193 nonsense_mediated_decay
  ENSMUST00000146298 Sf1-005 6363963-6368784 retained_intron
  ENSMUST00000154260 Sf1-011 6370119-6372092 processed_transcript
  ENSMUST00000155973 Sf1-010 6364557-6372619 protein_coding
  ENSMUST00000162237 Sf1-015 6374129-6375780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113485ENSMUST00000113487ENSMUST00000125516ENSMUST00000131083ENSMUST00000131252ENSMUST00000144409ENSMUST00000155973
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113485 14.085±1.14 40.571±6.88 18.859±3.51 28.738±7.85 34.249±8.40 18.820±2.45 9.887±2.23 11.886±2.42 8.932±2.45 36.391±5.38 11.577±1.80 27.167±7.73 23.136±8.99 18.106±2.28
ENSMUST00000113487 17.176±1.08 44.850±6.06 30.405±5.95 39.196±11.16 46.539±14.94 25.802±5.49 12.353±3.03 18.344±3.14 21.477±9.34 71.181±0.00 15.351±1.62 32.663±6.95 41.278±16.28 25.651±4.84
ENSMUST00000125516 N/A N/A N/A N/A N/A 43.760±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 221.372±0.00 143.294±0.00 217.111±0.00
ENSMUST00000131252 9.601±0.16 N/A N/A 8.036±0.00 N/A 7.168±0.00 N/A 7.854±1.06 6.005±2.11 N/A N/A 12.404±0.83 5.878±0.00 13.092±1.11
ENSMUST00000144409 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 143.162±0.00
ENSMUST00000155973 N/A N/A N/A 170.134±0.00 N/A N/A N/A N/A N/A N/A N/A 144.678±75.31 238.246±101.62 240.000±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YW CIL_0001YW_0002 CGP 19:6363690-6398459

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005681 IEA spliceosomal complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0030238 IGI male sex determination
GO:0033327 IGI Leydig cell differentiation
GO:0044822 IEA poly(A) RNA binding
GO:0048662 IEA negative regulation of smooth muscle cell proliferation
GO:0050810 IGI regulation of steroid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008188 sf1 splicing factor 1 protein_coding Danio_rerio
ENSG00000168066 SF1 splicing factor 1 protein_coding Homo_sapiens

Loading