C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: orthodenticle homolog 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011235 otx2 7955 - 17:44291216-44296277 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000008816 otx2-002 44291272-44296095 protein_coding
  ENSDART00000126097 otx2-001 44291216-44294264 protein_coding
  ENSDART00000156648 otx2-003 44292556-44296277 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverMuscleENSDART00000008816ENSDART00000126097
Transcript ID Brain Heart Liver Muscle
ENSDART00000008816 7.611±5.09 0.077±0.00 0.022±0.00 0.791±0.00
ENSDART00000126097 6.587±3.84 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007P7 CIL_0007P7_0003 UCNEbase 17:44146804-44443195
CIL_000602 CIL_000602_0001 CGP 17:44162041-44296277
CIL_0005ZZ CIL_0005ZZ_0001 CGP 17:44291216-44487389

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003406 IGI retinal pigment epithelium development
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007275 IEA multicellular organismal development
GO:0030901 IGI midbrain development
GO:0030902 IGI hindbrain development
GO:0030917 IGI midbrain-hindbrain boundary development
GO:0043565 IEA sequence-specific DNA binding
GO:0097306 IDA cellular response to alcohol

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000165588 OTX2 orthodenticle homeobox 2 protein_coding Homo_sapiens
ENSMUSG00000021848 Otx2 orthodenticle homolog 2 protein_coding Mus_musculus

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