C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000602_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076362-ENSDARG00000011235 CGP 7955 17:44162041-44296277
GeneTranscriptPositionBiotype
ENSDARG00000011235 (otx2)
orthodenticle homolog 2 		ENSDART00000008816 (otx2-002) 44291272-44296095 protein_coding
ENSDART00000126097 (otx2-001) 44291216-44294264 protein_coding
ENSDART00000156648 (otx2-003) 44292556-44296277 protein_coding
ENSDARG00000076362 (tmem260)
transmembrane protein 260 		ENSDART00000113427 (tmem260-201) 44162527-44238500 protein_coding
ENSDART00000154660 (tmem260-001) 44162041-44238501 protein_coding
ENSDARG00000097731 (si:dkey-166f24.2)
si:dkey-166f24.2 		ENSDART00000156631 (si:dkey-166f24.2-001) 44296165-44299524 antisense

Danio rerio Ensembl (Zv9)

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CIL_000602_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000070269-ENSG00000165588 CGP 9606 14:56488354-56810479
GeneTranscriptPositionBiotype
ENSG00000070269 (TMEM260)
transmembrane protein 260 		ENST00000261556 (TMEM260-001) 56579793-56649515 protein_coding
ENST00000538838 (TMEM260-201) 56579884-56634953 protein_coding
ENST00000539559 (TMEM260-006) 56579841-56648094 nonsense_mediated_decay
ENST00000553335 (TMEM260-014) 56609245-56619466 processed_transcript
ENST00000554981 (TMEM260-011) 56585694-56603941 retained_intron
ENST00000555046 (TMEM260-015) 56636516-56650606 protein_coding
ENST00000555497 (TMEM260-004) 56579826-56647852 nonsense_mediated_decay
ENST00000555905 (TMEM260-013) 56609141-56633171 nonsense_mediated_decay
ENST00000556079 (TMEM260-010) 56585693-56609189 retained_intron
ENST00000556422 (TMEM260-002) 56579620-56649515 nonsense_mediated_decay
ENST00000556648 (TMEM260-007) 56615451-56647922 retained_intron
ENST00000556810 (TMEM260-008) 56488354-56585902 protein_coding
ENST00000556929 (TMEM260-012) 56585855-56618663 nonsense_mediated_decay
ENST00000556975 (TMEM260-009) 56579826-56593224 processed_transcript
ENST00000557626 (TMEM260-005) 56579831-56616264 retained_intron
ENST00000557657 (TMEM260-003) 56579825-56613910 retained_intron
ENSG00000165588 (OTX2)
orthodenticle homeobox 2 		ENST00000339475 (OTX2-001) 56799905-56810469 protein_coding
ENST00000408990 (OTX2-007) 56801730-56805663 protein_coding
ENST00000554559 (OTX2-004) 56802025-56810479 protein_coding
ENST00000554788 (OTX2-005) 56801810-56805648 protein_coding
ENST00000554845 (OTX2-006) 56801913-56805648 protein_coding
ENST00000555006 (OTX2-002) 56801735-56810448 protein_coding
ENST00000555804 (OTX2-003) 56802115-56810479 protein_coding
ENSG00000242995 (RP11-1085N6.1)
 ENST00000471982 (RP11-1085N6.1-001) 56683421-56683741 processed_pseudogene
ENSG00000258803 (RP11-624J12.1)
 ENST00000557246 (RP11-624J12.1-001) 56514331-56551309 lincRNA
ENSG00000259133 (RP11-1085N6.3)
 ENST00000554597 (RP11-1085N6.3-002) 56648965-56730506 antisense
ENST00000556696 (RP11-1085N6.3-001) 56723137-56730535 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000602_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036339-ENSMUSG00000021848 CGP 10090 14:48446128-48667644
GeneTranscriptPositionBiotype
ENSMUSG00000021848 (Otx2)
orthodenticle homolog 2 		ENSMUST00000118578 (Otx2-001) 48657679-48665246 protein_coding
ENSMUST00000119070 (Otx2-002) 48658171-48667513 protein_coding
ENSMUST00000119739 (Otx2-008) 48661408-48665521 protein_coding
ENSMUST00000122009 (Otx2-003) 48658171-48662872 protein_coding
ENSMUST00000133479 (Otx2-006) 48661358-48667508 protein_coding
ENSMUST00000135279 (Otx2-005) 48658916-48661932 protein_coding
ENSMUST00000144465 (Otx2-007) 48659305-48667508 protein_coding
ENSMUST00000152018 (Otx2-004) 48658953-48667644 protein_coding
ENSMUSG00000036339 (Tmem260)
transmembrane protein 260 		ENSMUST00000111735 (Tmem260-001) 48446382-48515135 protein_coding
ENSMUST00000124720 (Tmem260-005) 48446128-48512790 protein_coding
ENSMUST00000133744 (Tmem260-002) 48446352-48501512 retained_intron
ENSMUST00000153765 (Tmem260-004) 48446393-48512135 nonsense_mediated_decay
ENSMUST00000156480 (Tmem260-003) 48446398-48508372 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000602_0001ENSDARG00000011235ENSDART00000008816ENSDART00000126097ENSDART00000156648ENSDARG00000076362ENSDART00000113427ENSDART00000154660ENSDARG00000097731ENSDART00000156631CIL_000602_0002ENSG00000070269ENST00000261556ENST00000538838ENST00000539559ENST00000553335ENST00000554981ENST00000555046ENST00000555497ENST00000555905ENST00000556079ENST00000556422ENST00000556648ENST00000556810ENST00000556929ENST00000556975ENST00000557626ENST00000557657ENSG00000165588ENST00000339475ENST00000408990ENST00000554559ENST00000554788ENST00000554845ENST00000555006ENST00000555804ENSG00000242995ENST00000471982ENSG00000258803ENST00000557246ENSG00000259133ENST00000554597ENST00000556696CIL_000602_0003ENSMUSG00000021848ENSMUST00000118578ENSMUST00000119070ENSMUST00000119739ENSMUST00000122009ENSMUST00000133479ENSMUST00000135279ENSMUST00000144465ENSMUST00000152018ENSMUSG00000036339ENSMUST00000111735ENSMUST00000124720ENSMUST00000133744ENSMUST00000153765ENSMUST00000156480
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000602_0001ENSDARG00000011235ENSDART00000008816ENSDART00000126097ENSDARG00000076362ENSDART00000113427ENSDART00000154660ENSDARG00000097731ENSDART00000156631CIL_000602_0002ENSG00000070269ENST00000261556ENST00000539559ENST00000553335ENST00000555497ENST00000556079ENST00000556422ENST00000556648ENST00000556975ENST00000557657ENSG00000165588ENST00000339475ENST00000408990ENST00000554559ENST00000555006ENSG00000242995ENST00000471982ENSG00000258803ENST00000557246ENSG00000259133ENST00000554597CIL_000602_0003ENSMUSG00000021848ENSMUST00000118578ENSMUST00000119070ENSMUST00000119739ENSMUST00000122009ENSMUST00000135279ENSMUSG00000036339ENSMUST00000111735ENSMUST00000124720ENSMUST00000133744ENSMUST00000153765
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011235 ENSDART00000008816 N/A N/A N/A 7.611±5.09 N/A N/A 0.077±0.00 N/A 0.022±0.00 N/A 0.791±0.00 N/A N/A N/A
ENSDART00000126097 N/A N/A N/A 6.587±3.84 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076362 ENSDART00000113427 N/A N/A N/A 3.132±0.98 N/A N/A 0.911±0.03 1.054±0.25 N/A N/A N/A N/A N/A N/A
ENSDART00000154660 N/A N/A N/A 1.531±0.72 N/A N/A 0.696±0.04 N/A 0.095±0.00 N/A 0.211±0.00 N/A N/A N/A
ENSDARG00000097731 ENSDART00000156631 N/A N/A N/A 4.184±0.00 N/A N/A N/A 0.541±0.17 N/A N/A 0.295±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000070269 ENST00000261556 0.660±0.00 0.810±0.00 N/A 1.040±0.00 1.016±0.00 N/A N/A 1.477±0.00 0.250±0.00 0.831±0.12 N/A 2.347±0.50 2.052±0.00 1.224±0.29
ENST00000538838 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539559 N/A N/A 0.814±0.00 N/A 2.236±0.00 1.008±0.00 N/A 0.284±0.00 0.811±0.00 2.110±0.00 N/A 2.627±0.00 N/A N/A
ENST00000553335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.590±0.00 4.999±0.00
ENST00000554981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555046 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555497 N/A N/A N/A N/A N/A N/A N/A N/A 0.844±0.00 N/A N/A N/A N/A N/A
ENST00000555905 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556079 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.673±0.00 N/A N/A N/A
ENST00000556422 N/A N/A N/A 0.722±0.00 N/A N/A N/A N/A N/A 0.498±0.00 0.155±0.00 N/A 0.410±0.08 N/A
ENST00000556648 N/A N/A N/A N/A N/A N/A 0.237±0.00 N/A N/A 1.664±0.00 N/A N/A N/A N/A
ENST00000556810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556929 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.235±0.00 N/A N/A N/A
ENST00000557626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557657 N/A N/A 0.555±0.00 N/A N/A N/A 0.172±0.00 N/A N/A N/A 0.140±0.00 N/A N/A N/A
ENSG00000165588 ENST00000339475 0.011±0.00 N/A N/A N/A 0.011±0.00 N/A N/A N/A N/A N/A N/A 0.009±0.00 0.015±0.00 0.184±0.00
ENST00000408990 N/A N/A N/A 0.756±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A
ENST00000554788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.139±0.00
ENST00000555804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242995 ENST00000471982 0.051±0.00 0.164±0.00 N/A 0.056±0.00 0.111±0.00 N/A N/A N/A N/A N/A 0.050±0.00 N/A N/A N/A
ENSG00000258803 ENST00000557246 0.046±0.00 0.017±0.00 N/A 0.056±0.00 N/A N/A N/A N/A 0.133±0.00 N/A N/A 0.018±0.00 N/A 0.027±0.00
ENSG00000259133 ENST00000554597 N/A N/A N/A N/A N/A 5.825±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556696 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021848 ENSMUST00000118578 N/A N/A N/A 3.496±2.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00
ENSMUST00000119070 N/A N/A N/A 3.471±2.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.020±0.00
ENSMUST00000119739 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A
ENSMUST00000122009 N/A N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A
ENSMUST00000133479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00
ENSMUST00000144465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000036339 ENSMUST00000111735 5.533±1.42 10.983±1.75 2.612±1.96 2.856±1.34 5.654±1.95 5.440±2.04 1.644±0.08 6.510±1.49 2.960±1.00 7.445±1.43 0.490±0.14 8.452±2.61 1.971±1.22 1.501±0.35
ENSMUST00000124720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.610±0.00 0.764±0.14 0.737±0.46
ENSMUST00000133744 2.330±0.00 10.883±4.14 N/A N/A 2.479±1.21 3.795±1.49 N/A N/A 1.952±0.49 3.652±0.00 N/A 7.557±2.61 N/A N/A
ENSMUST00000153765 N/A 11.666±3.52 N/A N/A 5.648±0.00 3.676±1.20 N/A N/A 1.442±0.11 N/A N/A 6.378±0.60 0.744±0.00 N/A
ENSMUST00000156480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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