C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Region Summary |
| CIL_000602_0001 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSDARG00000076362-ENSDARG00000011235 | CGP | 7955 | 17:44162041-44296277  |
|
| Gene | Transcript | Position | Biotype | |
ENSDARG00000011235  (otx2)orthodenticle homolog 2 |
ENSDART00000008816 (otx2-002)
|
44291272-44296095 | protein_coding | |
|
ENSDART00000126097 (otx2-001)
|
44291216-44294264 | protein_coding | ||
|
ENSDART00000156648 (otx2-003)
|
44292556-44296277 | protein_coding | ||
|
ENSDARG00000076362 (tmem260) transmembrane protein 260 |
ENSDART00000113427 (tmem260-201)
|
44162527-44238500 | protein_coding | |
|
ENSDART00000154660 (tmem260-001)
|
44162041-44238501 | protein_coding | ||
|
ENSDARG00000097731 (si:dkey-166f24.2) si:dkey-166f24.2 |
ENSDART00000156631 (si:dkey-166f24.2-001)
|
44296165-44299524 | antisense | |
| CIL_000602_0002 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSG00000070269-ENSG00000165588 | CGP | 9606 | 14:56488354-56810479 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSG00000070269 (TMEM260) transmembrane protein 260 |
ENST00000261556 (TMEM260-001)
|
56579793-56649515 | protein_coding | |
|
ENST00000538838 (TMEM260-201)
|
56579884-56634953 | protein_coding | ||
|
ENST00000539559 (TMEM260-006)
|
56579841-56648094 | nonsense_mediated_decay | ||
|
ENST00000553335 (TMEM260-014)
|
56609245-56619466 | processed_transcript | ||
|
ENST00000554981 (TMEM260-011)
|
56585694-56603941 | retained_intron | ||
|
ENST00000555046 (TMEM260-015)
|
56636516-56650606 | protein_coding | ||
|
ENST00000555497 (TMEM260-004)
|
56579826-56647852 | nonsense_mediated_decay | ||
|
ENST00000555905 (TMEM260-013)
|
56609141-56633171 | nonsense_mediated_decay | ||
|
ENST00000556079 (TMEM260-010)
|
56585693-56609189 | retained_intron | ||
|
ENST00000556422 (TMEM260-002)
|
56579620-56649515 | nonsense_mediated_decay | ||
|
ENST00000556648 (TMEM260-007)
|
56615451-56647922 | retained_intron | ||
|
ENST00000556810 (TMEM260-008)
|
56488354-56585902 | protein_coding | ||
|
ENST00000556929 (TMEM260-012)
|
56585855-56618663 | nonsense_mediated_decay | ||
|
ENST00000556975 (TMEM260-009)
|
56579826-56593224 | processed_transcript | ||
|
ENST00000557626 (TMEM260-005)
|
56579831-56616264 | retained_intron | ||
|
ENST00000557657 (TMEM260-003)
|
56579825-56613910 | retained_intron | ||
|
ENSG00000165588 (OTX2) orthodenticle homeobox 2 |
ENST00000339475 (OTX2-001)
|
56799905-56810469 | protein_coding | |
|
ENST00000408990 (OTX2-007)
|
56801730-56805663 | protein_coding | ||
|
ENST00000554559 (OTX2-004)
|
56802025-56810479 | protein_coding | ||
|
ENST00000554788 (OTX2-005)
|
56801810-56805648 | protein_coding | ||
|
ENST00000554845 (OTX2-006)
|
56801913-56805648 | protein_coding | ||
|
ENST00000555006 (OTX2-002)
|
56801735-56810448 | protein_coding | ||
|
ENST00000555804 (OTX2-003)
|
56802115-56810479 | protein_coding | ||
|
ENSG00000242995 (RP11-1085N6.1) |
ENST00000471982 (RP11-1085N6.1-001)
|
56683421-56683741 | processed_pseudogene | |
|
ENSG00000258803 (RP11-624J12.1) |
ENST00000557246 (RP11-624J12.1-001)
|
56514331-56551309 | lincRNA | |
|
ENSG00000259133 (RP11-1085N6.3) |
ENST00000554597 (RP11-1085N6.3-002)
|
56648965-56730506 | antisense | |
|
ENST00000556696 (RP11-1085N6.3-001)
|
56723137-56730535 | antisense | ||
| CIL_000602_0003 (Click to Hide/Show) |
| Source ID | Type | Tax ID | Position | |
|---|---|---|---|---|
| ENSMUSG00000036339-ENSMUSG00000021848 | CGP | 10090 | 14:48446128-48667644 |
|
| Gene | Transcript | Position | Biotype | |
|
ENSMUSG00000021848 (Otx2) orthodenticle homolog 2 |
ENSMUST00000118578 (Otx2-001)
|
48657679-48665246 | protein_coding | |
|
ENSMUST00000119070 (Otx2-002)
|
48658171-48667513 | protein_coding | ||
|
ENSMUST00000119739 (Otx2-008)
|
48661408-48665521 | protein_coding | ||
|
ENSMUST00000122009 (Otx2-003)
|
48658171-48662872 | protein_coding | ||
|
ENSMUST00000133479 (Otx2-006)
|
48661358-48667508 | protein_coding | ||
|
ENSMUST00000135279 (Otx2-005)
|
48658916-48661932 | protein_coding | ||
|
ENSMUST00000144465 (Otx2-007)
|
48659305-48667508 | protein_coding | ||
|
ENSMUST00000152018 (Otx2-004)
|
48658953-48667644 | protein_coding | ||
|
ENSMUSG00000036339 (Tmem260) transmembrane protein 260 |
ENSMUST00000111735 (Tmem260-001)
|
48446382-48515135 | protein_coding | |
|
ENSMUST00000124720 (Tmem260-005)
|
48446128-48512790 | protein_coding | ||
|
ENSMUST00000133744 (Tmem260-002)
|
48446352-48501512 | retained_intron | ||
|
ENSMUST00000153765 (Tmem260-004)
|
48446393-48512135 | nonsense_mediated_decay | ||
|
ENSMUST00000156480 (Tmem260-003)
|
48446398-48508372 | retained_intron | ||
Expression Patterns
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