C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: lysophosphatidylcholine acyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000011506 lpcat1 7955 + 19:28777041-28819829 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000103855 lpcat1-003 28777105-28819820 protein_coding
  ENSDART00000139433 lpcat1-005 28777041-28805804 protein_coding
  ENSDART00000140038 lpcat1-002 28807344-28816762 processed_transcript
  ENSDART00000150932 lpcat1-001 28816892-28819829 nonsense_mediated_decay
  ENSDART00000151752 lpcat1-004 28777041-28801618 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000103855ENSDART00000139433ENSDART00000150932
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000103855 0.768±0.28 1.126±0.00 11.136±3.82 0.123±0.00 0.344±0.00
ENSDART00000139433 1.950±0.61 0.829±0.00 N/A 0.128±0.00 N/A
ENSDART00000150932 N/A N/A 33.544±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AA CIL_0003AA_0001 CGP 19:28769785-28819829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 IEA Golgi membrane
GO:0005509 IEA calcium ion binding
GO:0005783 ISS endoplasmic reticulum
GO:0005789 IEA endoplasmic reticulum membrane
GO:0005794 ISS Golgi apparatus
GO:0005811 IEA lipid particle
GO:0006629 IEA lipid metabolic process
GO:0008152 IEA metabolic process
GO:0008654 ISS phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0016740 IEA transferase activity
GO:0016746 IEA transferase activity, transferring acyl groups
GO:0047184 ISS 1-acylglycerophosphocholine O-acyltransferase activity
GO:0047192 IEA 1-alkylglycerophosphocholine O-acetyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000153395 LPCAT1 lysophosphatidylcholine acyltransferase 1 protein_coding Homo_sapiens
ENSMUSG00000021608 Lpcat1 lysophosphatidylcholine acyltransferase 1 protein_coding Mus_musculus

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