C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: orthopedia homolog a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014201 otpa 7955 + 21:7521742-7526406 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000027268 otpa-001 7521820-7526406 protein_coding
  ENSDART00000135485 otpa-002 7521742-7525665 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000027268ENSDART00000135485
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000027268 8.871±3.65 0.036±0.00 0.171±0.04 0.022±0.00 0.474±0.00
ENSDART00000135485 N/A 0.068±0.00 N/A N/A 0.665±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OX CIL_0007OX_0004 UCNEbase 21:7446038-7542480
CIL_00023D CIL_00023D_0001 CGP 21:7484927-7526406
CIL_000239 CIL_000239_0001 CGP 21:7521742-7569956

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0007632 IMP visual behavior
GO:0021884 IMP forebrain neuron development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000171540 OTP orthopedia homeobox protein_coding Homo_sapiens
ENSMUSG00000021685 Otp orthopedia homolog (Drosophila) protein_coding Mus_musculus

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