C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein, X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014244 rbmx 7955 - 14:32725471-32732600 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000007927 rbmx-201 32727660-32732600 protein_coding
  ENSDART00000128730 rbmx-001 32727652-32732600 protein_coding
  ENSDART00000131024 rbmx-202 32725473-32732596 protein_coding
  ENSDART00000134748 rbmx-004 32728808-32732573 processed_transcript
  ENSDART00000138084 rbmx-002 32725471-32732596 nonsense_mediated_decay
  ENSDART00000139839 rbmx-003 32728297-32730516 processed_transcript
  ENSDART00000144615 rbmx-005 32725471-32727215 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyENSDART00000007927ENSDART00000128730ENSDART00000131024ENSDART00000139839ENSDART00000144615
Transcript ID Heart Kidney
ENSDART00000007927 4.552±0.00 N/A
ENSDART00000128730 N/A 31.322±0.00
ENSDART00000131024 N/A 8.145±0.00
ENSDART00000139839 9.934±0.00 10.415±0.00
ENSDART00000144615 5.719±0.84 5.438±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0001 CGP 14:32671473-32732600
CIL_0003TR CIL_0003TR_0001 CGP 14:32725471-32751543

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0001047 ISS core promoter binding
GO:0003676 IEA nucleic acid binding
GO:0003682 ISS chromatin binding
GO:0003723 ISS RNA binding
GO:0003729 ISS mRNA binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005719 ISS nuclear euchromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0006509 ISS membrane protein ectodomain proteolysis
GO:0007275 IEA multicellular organismal development
GO:0008380 IEA RNA splicing
GO:0030529 IEA ribonucleoprotein complex
GO:0044530 ISS supraspliceosomal complex
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0051260 ISS protein homooligomerization
GO:0070062 ISS extracellular vesicular exosome
GO:0071013 ISS catalytic step 2 spliceosome
GO:0071347 ISS cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000147274 RBMX RNA binding motif protein, X-linked protein_coding Homo_sapiens
ENSG00000169800 RBMY1F RNA binding motif protein, Y-linked, family 1, member F protein_coding Homo_sapiens
ENSG00000170748 RBMXL2 RNA binding motif protein, X-linked-like 2 protein_coding Homo_sapiens
ENSG00000175718 RBMXL3 RNA binding motif protein, X-linked-like 3 protein_coding Homo_sapiens
ENSG00000213516 RBMXL1 RNA binding motif protein, X-linked-like 1 protein_coding Homo_sapiens
ENSG00000226941 RBMY1J RNA binding motif protein, Y-linked, family 1, member J protein_coding Homo_sapiens
ENSG00000234414 RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 protein_coding Homo_sapiens
ENSG00000242389 RBMY1E RNA binding motif protein, Y-linked, family 1, member E protein_coding Homo_sapiens
ENSG00000242875 RBMY1B RNA binding motif protein, Y-linked, family 1, member B protein_coding Homo_sapiens
ENSG00000244395 RBMY1D RNA binding motif protein, Y-linked, family 1, member D protein_coding Homo_sapiens
ENSG00000278984 RBMY1B RNA binding motif protein, Y-linked, family 1, member B protein_coding Homo_sapiens
ENSG00000279309 RBMY1D RNA binding motif protein, Y-linked, family 1, member D protein_coding Homo_sapiens
ENSG00000279323 RBMY1F RNA binding motif protein, Y-linked, family 1, member J protein_coding Homo_sapiens
ENSG00000279934 RBMY1A1 RNA binding motif protein, Y-linked, family 1, member A1 protein_coding Homo_sapiens
ENSG00000280343 RBMY1E RNA binding motif protein, Y-linked, family 1, member E protein_coding Homo_sapiens
ENSG00000280386 RBMY1J RNA binding motif protein, Y-linked, family 1, member F protein_coding Homo_sapiens
ENSMUSG00000031134 Rbmx RNA binding motif protein, X chromosome protein_coding Mus_musculus
ENSMUSG00000037070 Rbmxl1 RNA binding motif protein, X linked-like-1 protein_coding Mus_musculus
ENSMUSG00000073894 Rbmxl2 RNA binding motif protein, X-linked-like 2 protein_coding Mus_musculus
ENSMUSG00000091987 Gm10352 predicted gene 10352 protein_coding Mus_musculus
ENSMUSG00000093918 Gm21677 predicted gene, 21677 protein_coding Mus_musculus
ENSMUSG00000093987 Gm21704 predicted gene, 21704 protein_coding Mus_musculus
ENSMUSG00000094511 Gm21693 predicted gene, 21693 protein_coding Mus_musculus
ENSMUSG00000094658 Rbmy RNA binding motif protein, Y chromosome protein_coding Mus_musculus
ENSMUSG00000095852 Gm10256 predicted gene 10256 protein_coding Mus_musculus
ENSMUSG00000095948 Gm21708 predicted gene, 21708 protein_coding Mus_musculus
ENSMUSG00000096520 Gm3376 predicted gene 3376 protein_coding Mus_musculus
ENSMUSG00000101667 RP24-439L9.4 predicted gene 29289 protein_coding Mus_musculus
ENSMUSG00000102053 Gm4064 predicted gene 4064 protein_coding Mus_musculus

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