C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein, X-linked
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000147274 RBMX 9606 - X:136848004-136880764 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320676 RBMX-001 136873461-136880725 protein_coding
  ENST00000419968 RBMX-007 136872275-136879431 protein_coding
  ENST00000431446 RBMX-003 136869187-136880725 protein_coding
  ENST00000464781 RBMX-002 136873449-136880725 nonsense_mediated_decay
  ENST00000496459 RBMX-004 136869192-136873982 processed_transcript
  ENST00000561733 RBMX-012 136848004-136873425 processed_transcript
  ENST00000562646 RBMX-006 136873958-136880725 protein_coding
  ENST00000563370 RBMX-009 136877916-136880725 nonsense_mediated_decay
  ENST00000565438 RBMX-005 136873978-136880764 protein_coding
  ENST00000565907 RBMX-011 136879017-136880722 retained_intron
  ENST00000567262 RBMX-010 136876600-136880725 processed_transcript
  ENST00000568578 RBMX-008 136869194-136880722 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000320676ENST00000419968ENST00000431446ENST00000464781ENST00000496459ENST00000562646ENST00000565438ENST00000568578
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000320676 21.195±0.00 22.708±0.00 7.608±0.00 13.477±3.35 9.539±1.73 20.718±9.06 10.633±3.86 8.734±3.72 16.525±8.27 20.633±0.00 22.706±15.13 30.934±23.62 33.571±14.93 13.312±0.00
ENST00000419968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.152±0.00 N/A N/A N/A
ENST00000431446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.370±0.00 8.814±0.00 5.143±0.00 6.411±0.00
ENST00000464781 N/A N/A 12.076±0.00 4.466±0.00 4.939±0.00 N/A N/A N/A N/A 11.504±0.00 N/A N/A N/A N/A
ENST00000496459 8.092±0.00 18.996±0.00 N/A 8.458±0.00 9.018±0.00 4.746±0.00 3.460±0.00 6.536±0.00 3.081±0.00 6.407±0.00 6.226±0.00 15.659±7.46 N/A 12.373±0.00
ENST00000562646 N/A N/A N/A N/A 4.964±0.00 6.432±0.00 2.734±0.00 N/A N/A 6.855±0.00 N/A N/A N/A N/A
ENST00000565438 N/A N/A N/A N/A 9.908±0.00 N/A N/A N/A N/A N/A N/A 26.226±9.88 23.964±0.00 8.511±1.00
ENST00000568578 N/A N/A 3.633±0.00 3.759±0.00 2.875±0.00 5.445±0.00 1.820±0.04 2.259±0.00 2.543±1.88 N/A 1.017±0.00 2.825±0.00 N/A 1.487±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0002 CGP X:136665547-136880764

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IDA regulation of alternative mRNA splicing, via spliceosome
GO:0000398 IC mRNA splicing, via spliceosome
GO:0001047 IDA core promoter binding
GO:0001649 IDA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003682 IDA chromatin binding
GO:0003723 IDA RNA binding
GO:0003729 IDA mRNA binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005719 IDA nuclear euchromatin
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006509 IDA membrane protein ectodomain proteolysis
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0030529 NAS ribonucleoprotein complex
GO:0044530 IDA supraspliceosomal complex
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048025 ISS negative regulation of mRNA splicing, via spliceosome
GO:0048026 ISS positive regulation of mRNA splicing, via spliceosome
GO:0051260 ISS protein homooligomerization
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome
GO:0071347 IDA cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014244 rbmx RNA binding motif protein, X-linked protein_coding Danio_rerio
ENSMUSG00000031134 Rbmx RNA binding motif protein, X chromosome protein_coding Mus_musculus

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