C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000PR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000006683-ENSDARG00000014244 CGP 7955 14:32671473-32732600
GeneTranscriptPositionBiotype
ENSDARG00000014244 (rbmx)
RNA binding motif protein, X-linked 		ENSDART00000007927 (rbmx-201) 32727660-32732600 protein_coding
ENSDART00000128730 (rbmx-001) 32727652-32732600 protein_coding
ENSDART00000131024 (rbmx-202) 32725473-32732596 protein_coding
ENSDART00000134748 (rbmx-004) 32728808-32732573 processed_transcript
ENSDART00000138084 (rbmx-002) 32725471-32732596 nonsense_mediated_decay
ENSDART00000139839 (rbmx-003) 32728297-32730516 processed_transcript
ENSDART00000144615 (rbmx-005) 32725471-32727215 processed_transcript
CIL_0000PR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129675-ENSG00000147274 CGP 9606 X:136665547-136880764
GeneTranscriptPositionBiotype
ENSG00000129675 (ARHGEF6)
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 		ENST00000250617 (ARHGEF6-001) 136665547-136782088 protein_coding
ENST00000370620 (ARHGEF6-003) 136665547-136767343 protein_coding
ENST00000370622 (ARHGEF6-002) 136665547-136768627 protein_coding
ENSG00000147274 (RBMX)
RNA binding motif protein, X-linked 		ENST00000320676 (RBMX-001) 136873461-136880725 protein_coding
ENST00000419968 (RBMX-007) 136872275-136879431 protein_coding
ENST00000431446 (RBMX-003) 136869187-136880725 protein_coding
ENST00000464781 (RBMX-002) 136873449-136880725 nonsense_mediated_decay
ENST00000496459 (RBMX-004) 136869192-136873982 processed_transcript
ENST00000561733 (RBMX-012) 136848004-136873425 processed_transcript
ENST00000562646 (RBMX-006) 136873958-136880725 protein_coding
ENST00000563370 (RBMX-009) 136877916-136880725 nonsense_mediated_decay
ENST00000565438 (RBMX-005) 136873978-136880764 protein_coding
ENST00000565907 (RBMX-011) 136879017-136880722 retained_intron
ENST00000567262 (RBMX-010) 136876600-136880725 processed_transcript
ENST00000568578 (RBMX-008) 136869194-136880722 nonsense_mediated_decay
ENSG00000202279 (Y_RNA)
Y RNA 		ENST00000365409 (Y_RNA.1-552) 136816477-136816574 misc_RNA
ENSG00000225125 (RANP4)
RAN, member RAS oncogene family pseudogene 4 		ENST00000413361 (RANP4-001) 136807223-136807877 processed_pseudogene
ENSG00000231164 (RPL7P56)
ribosomal protein L7 pseudogene 56 		ENST00000429441 (RPL7P56-001) 136791064-136791780 processed_pseudogene
ENSG00000271339 (RP11-1114A5.6)
 ENST00000605245 (RP11-1114A5.6-001) 136788286-136788787 processed_pseudogene
CIL_0000PR_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031133-ENSMUSG00000031134 CGP 10090 X:57231485-57393036
GeneTranscriptPositionBiotype
ENSMUSG00000031133 (Arhgef6)
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6 		ENSMUST00000033468 (Arhgef6-001) 57231485-57338729 protein_coding
ENSMUST00000114735 (Arhgef6-003) 57233440-57281594 protein_coding
ENSMUST00000134028 (Arhgef6-002) 57272228-57326601 retained_intron
ENSMUST00000135098 (Arhgef6-005) 57335904-57338506 retained_intron
ENSMUST00000151768 (Arhgef6-004) 57231485-57240889 retained_intron
ENSMUST00000175636 (Arhgef6-007) 57298512-57300859 processed_transcript
ENSMUST00000175900 (Arhgef6-008) 57239230-57251344 protein_coding
ENSMUST00000176986 (Arhgef6-006) 57248987-57326599 protein_coding
ENSMUSG00000031134 (Rbmx)
RNA binding motif protein, X chromosome 		ENSMUST00000098470 (Rbmx-004) 57386030-57393036 protein_coding
ENSMUST00000114726 (Rbmx-002) 57386362-57393036 protein_coding
ENSMUST00000114730 (Rbmx-005) 57386358-57392962 protein_coding
ENSMUST00000133346 (Rbmx-006) 57390143-57392797 protein_coding
ENSMUST00000140384 (Rbmx-001) 57383530-57392981 nonsense_mediated_decay
ENSMUST00000143310 (Rbmx-003) 57386916-57393020 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PR_0001ENSDARG00000014244ENSDART00000007927ENSDART00000128730ENSDART00000131024ENSDART00000134748ENSDART00000138084ENSDART00000139839ENSDART00000144615CIL_0000PR_0002ENSG00000129675ENST00000250617ENST00000370620ENST00000370622ENSG00000147274ENST00000320676ENST00000419968ENST00000431446ENST00000464781ENST00000496459ENST00000561733ENST00000562646ENST00000563370ENST00000565438ENST00000565907ENST00000567262ENST00000568578ENSG00000202279ENST00000365409ENSG00000225125ENST00000413361ENSG00000231164ENST00000429441ENSG00000271339ENST00000605245CIL_0000PR_0003ENSMUSG00000031133ENSMUST00000033468ENSMUST00000114735ENSMUST00000134028ENSMUST00000135098ENSMUST00000151768ENSMUST00000175636ENSMUST00000175900ENSMUST00000176986ENSMUSG00000031134ENSMUST00000098470ENSMUST00000114726ENSMUST00000114730ENSMUST00000133346ENSMUST00000140384ENSMUST00000143310
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000PR_0001ENSDARG00000014244ENSDART00000007927ENSDART00000128730ENSDART00000131024ENSDART00000139839ENSDART00000144615CIL_0000PR_0002ENSG00000129675ENST00000250617ENST00000370620ENST00000370622ENSG00000147274ENST00000320676ENST00000419968ENST00000431446ENST00000464781ENST00000496459ENST00000562646ENST00000565438ENST00000568578ENSG00000202279ENST00000365409ENSG00000225125ENST00000413361ENSG00000231164ENST00000429441ENSG00000271339ENST00000605245CIL_0000PR_0003ENSMUSG00000031133ENSMUST00000033468ENSMUST00000114735ENSMUST00000151768ENSMUST00000175636ENSMUST00000175900ENSMUST00000176986ENSMUSG00000031134ENSMUST00000098470ENSMUST00000114726ENSMUST00000114730ENSMUST00000140384ENSMUST00000143310
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000014244 ENSDART00000007927 N/A N/A N/A N/A N/A N/A 4.552±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000128730 N/A N/A N/A N/A N/A N/A N/A 31.322±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000131024 N/A N/A N/A N/A N/A N/A N/A 8.145±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000134748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000138084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139839 N/A N/A N/A N/A N/A N/A 9.934±0.00 10.415±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000144615 N/A N/A N/A N/A N/A N/A 5.719±0.84 5.438±1.38 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129675 ENST00000250617 4.583±0.00 N/A N/A 0.724±0.00 4.217±0.23 1.381±0.00 0.472±0.00 N/A 2.609±0.00 4.755±0.00 2.276±1.72 0.878±0.27 2.054±0.68 0.220±0.00
ENST00000370620 16.977±0.00 8.238±0.00 N/A 5.389±3.17 13.477±10.73 3.571±2.80 6.930±4.71 3.216±0.00 1.355±0.48 4.865±3.62 5.217±0.31 3.645±2.31 9.247±1.96 3.824±1.47
ENST00000370622 N/A N/A N/A N/A N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000147274 ENST00000320676 21.195±0.00 22.708±0.00 7.608±0.00 13.477±3.35 9.539±1.73 20.718±9.06 10.633±3.86 8.734±3.72 16.525±8.27 20.633±0.00 22.706±15.13 30.934±23.62 33.571±14.93 13.312±0.00
ENST00000419968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.152±0.00 N/A N/A N/A
ENST00000431446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.370±0.00 8.814±0.00 5.143±0.00 6.411±0.00
ENST00000464781 N/A N/A 12.076±0.00 4.466±0.00 4.939±0.00 N/A N/A N/A N/A 11.504±0.00 N/A N/A N/A N/A
ENST00000496459 8.092±0.00 18.996±0.00 N/A 8.458±0.00 9.018±0.00 4.746±0.00 3.460±0.00 6.536±0.00 3.081±0.00 6.407±0.00 6.226±0.00 15.659±7.46 N/A 12.373±0.00
ENST00000561733 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562646 N/A N/A N/A N/A 4.964±0.00 6.432±0.00 2.734±0.00 N/A N/A 6.855±0.00 N/A N/A N/A N/A
ENST00000563370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565438 N/A N/A N/A N/A 9.908±0.00 N/A N/A N/A N/A N/A N/A 26.226±9.88 23.964±0.00 8.511±1.00
ENST00000565907 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568578 N/A N/A 3.633±0.00 3.759±0.00 2.875±0.00 5.445±0.00 1.820±0.04 2.259±0.00 2.543±1.88 N/A 1.017±0.00 2.825±0.00 N/A 1.487±0.00
ENSG00000202279 ENST00000365409 N/A N/A N/A 0.803±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225125 ENST00000413361 0.128±0.00 0.079±0.00 N/A 1.267±0.73 0.648±0.31 0.711±0.00 0.753±0.39 0.184±0.00 0.737±0.00 0.446±0.30 1.263±1.10 0.878±0.49 0.058±0.02 0.063±0.02
ENSG00000231164 ENST00000429441 0.064±0.00 0.017±0.00 N/A 0.016±0.00 0.032±0.00 0.225±0.00 N/A N/A 0.158±0.14 0.030±0.00 0.030±0.00 0.026±0.00 N/A N/A
ENSG00000271339 ENST00000605245 N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A 0.152±0.00 N/A 0.099±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031133 ENSMUST00000033468 2.005±0.75 N/A 1.044±0.26 0.299±0.05 3.563±1.58 0.481±0.16 1.713±0.00 1.092±0.16 0.644±0.38 3.410±0.77 2.840±0.00 2.177±1.26 9.436±1.31 0.561±0.08
ENSMUST00000114735 N/A N/A N/A 2.323±0.00 N/A N/A N/A N/A N/A N/A N/A 10.094±0.00 125.994±3.98 10.219±6.43
ENSMUST00000134028 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135098 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151768 6.119±2.07 4.625±1.73 2.547±1.14 1.021±0.65 13.459±7.12 1.872±0.35 8.550±1.40 2.976±0.99 1.050±0.47 5.725±1.95 2.649±0.00 5.544±2.01 26.251±4.62 N/A
ENSMUST00000175636 N/A N/A N/A 1.856±0.00 N/A N/A N/A N/A 1.259±0.00 N/A N/A N/A N/A N/A
ENSMUST00000175900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.147±0.89
ENSMUST00000176986 N/A 1.943±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 5.185±0.00 N/A N/A N/A
ENSMUSG00000031134 ENSMUST00000098470 2.277±0.76 1.180±0.12 3.919±1.27 19.390±5.11 1.943±0.72 1.634±0.49 1.382±0.34 1.766±0.48 2.000±1.26 2.705±0.37 1.023±0.00 3.887±2.39 3.671±0.20 0.411±0.11
ENSMUST00000114726 2.080±0.00 N/A N/A N/A 3.411±0.51 N/A 2.637±0.64 2.931±0.36 2.396±2.00 4.288±0.89 2.137±0.42 3.120±1.40 6.289±0.97 0.462±0.04
ENSMUST00000114730 2.447±0.00 0.766±0.00 3.411±0.00 21.783±5.52 5.114±0.00 N/A 2.142±0.73 2.872±0.15 3.371±0.00 N/A N/A 6.027±3.52 11.329±5.97 N/A
ENSMUST00000133346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140384 5.146±0.83 2.424±0.00 12.447±4.09 37.829±9.69 3.020±0.88 2.427±0.64 3.077±0.75 3.846±0.99 6.266±4.89 4.703±1.43 2.944±0.51 7.880±6.85 12.439±4.10 2.070±0.38
ENSMUST00000143310 N/A N/A N/A 11.448±0.00 N/A N/A N/A N/A N/A N/A N/A 25.472±0.00 30.834±6.94 N/A

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