C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA binding motif protein, X chromosome
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000031134 Rbmx 10090 - X:57383530-57393036 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000098470 Rbmx-004 57386030-57393036 protein_coding
  ENSMUST00000114726 Rbmx-002 57386362-57393036 protein_coding
  ENSMUST00000114730 Rbmx-005 57386358-57392962 protein_coding
  ENSMUST00000133346 Rbmx-006 57390143-57392797 protein_coding
  ENSMUST00000140384 Rbmx-001 57383530-57392981 nonsense_mediated_decay
  ENSMUST00000143310 Rbmx-003 57386916-57393020 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098470ENSMUST00000114726ENSMUST00000114730ENSMUST00000140384ENSMUST00000143310
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098470 2.277±0.76 1.180±0.12 3.919±1.27 19.390±5.11 1.943±0.72 1.634±0.49 1.382±0.34 1.766±0.48 2.000±1.26 2.705±0.37 1.023±0.00 3.887±2.39 3.671±0.20 0.411±0.11
ENSMUST00000114726 2.080±0.00 N/A N/A N/A 3.411±0.51 N/A 2.637±0.64 2.931±0.36 2.396±2.00 4.288±0.89 2.137±0.42 3.120±1.40 6.289±0.97 0.462±0.04
ENSMUST00000114730 2.447±0.00 0.766±0.00 3.411±0.00 21.783±5.52 5.114±0.00 N/A 2.142±0.73 2.872±0.15 3.371±0.00 N/A N/A 6.027±3.52 11.329±5.97 N/A
ENSMUST00000140384 5.146±0.83 2.424±0.00 12.447±4.09 37.829±9.69 3.020±0.88 2.427±0.64 3.077±0.75 3.846±0.99 6.266±4.89 4.703±1.43 2.944±0.51 7.880±6.85 12.439±4.10 2.070±0.38
ENSMUST00000143310 N/A N/A N/A 11.448±0.00 N/A N/A N/A N/A N/A N/A N/A 25.472±0.00 30.834±6.94 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PR CIL_0000PR_0003 CGP X:57231485-57393036
CIL_0003TR CIL_0003TR_0002 CGP X:57383530-57488767

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000381 IEA regulation of alternative mRNA splicing, via spliceosome
GO:0001047 IEA core promoter binding
GO:0001649 IEA osteoblast differentiation
GO:0003676 IEA nucleic acid binding
GO:0003682 IEA chromatin binding
GO:0003723 IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005515 IEA protein binding
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006509 IEA membrane protein ectodomain proteolysis
GO:0016020 IEA membrane
GO:0044530 IEA supraspliceosomal complex
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070062 IEA extracellular vesicular exosome
GO:0071013 IEA catalytic step 2 spliceosome
GO:0071347 IEA cellular response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000014244 rbmx RNA binding motif protein, X-linked protein_coding Danio_rerio
ENSG00000147274 RBMX RNA binding motif protein, X-linked protein_coding Homo_sapiens

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