C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleophosmin 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000014329 npm1a 7955 + 10:22234687-22245329 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000021240 npm1a-201 22234704-22245326 protein_coding
  ENSDART00000100526 npm1a-202 22234704-22245326 protein_coding
  ENSDART00000129634 npm1a-203 22234704-22245326 protein_coding
  ENSDART00000132888 npm1a-002 22234811-22241814 retained_intron
  ENSDART00000133304 npm1a-001 22234687-22245329 protein_coding
  ENSDART00000134189 npm1a-005 22234811-22244842 protein_coding
  ENSDART00000139208 npm1a-004 22241740-22244968 retained_intron
  ENSDART00000143461 npm1a-003 22235371-22236457 processed_transcript

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Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000021240ENSDART00000133304
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000021240 19.161±5.88 52.244±19.48 68.086±46.60 57.619±0.00 32.833±0.00
ENSDART00000133304 N/A 4.223±0.00 26.294±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OL CIL_0004OL_0001 CGP 10:22234687-22257211

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005730 IDA nucleolus
GO:0030097 IMP hemopoiesis
GO:0045893 IEA positive regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000181163 NPM1 nucleophosmin (nucleolar phosphoprotein B23, numatrin) protein_coding Homo_sapiens
ENSMUSG00000057113 Npm1 nucleophosmin 1 protein_coding Mus_musculus
ENSMUSG00000090602 Gm5611 predicted gene 5611 protein_coding Mus_musculus

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