C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox transcription factor 1, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000020354 lmx1a 7955 + 20:33946947-33964868 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000019059 lmx1a-001 33946947-33964868 protein_coding
  ENSDART00000139609 lmx1a-003 33948844-33963283 protein_coding
  ENSDART00000146292 lmx1a-002 33948843-33961270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000019059ENSDART00000139609ENSDART00000146292
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000019059 0.743±0.45 0.635±0.20 1.619±0.00 0.191±0.00 0.264±0.00
ENSDART00000139609 N/A N/A N/A 0.078±0.00 N/A
ENSDART00000146292 N/A N/A N/A N/A 0.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MM CIL_0005MM_0001 CGP 20:33899864-33964868

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0008270 IEA zinc ion binding
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000162761 LMX1A LIM homeobox transcription factor 1, alpha protein_coding Homo_sapiens
ENSMUSG00000026686 Lmx1a LIM homeobox transcription factor 1 alpha protein_coding Mus_musculus

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