C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005MM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004697-ENSDARG00000020354 CGP 7955 20:33899864-33964868
GeneTranscriptPositionBiotype
ENSDARG00000004697 (rxrgb)
retinoid X receptor, gamma b 		ENSDART00000002554 (rxrgb-001) 33899864-33944628 protein_coding
ENSDARG00000012656 (atf6)
activating transcription factor 6 		ENSDART00000007700 (atf6-001) 33834042-33889412 protein_coding
ENSDART00000153018 (atf6-002) 33865264-33934480 protein_coding
ENSDARG00000020354 (lmx1a)
LIM homeobox transcription factor 1, alpha 		ENSDART00000019059 (lmx1a-001) 33946947-33964868 protein_coding
ENSDART00000139609 (lmx1a-003) 33948844-33963283 protein_coding
ENSDART00000146292 (lmx1a-002) 33948843-33961270 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005MM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015843-ENSMUSG00000026686 CGP 10090 1:167598384-167848741
GeneTranscriptPositionBiotype
ENSMUSG00000015843 (Rxrg)
retinoid X receptor gamma 		ENSMUST00000015987 (Rxrg-001) 167598384-167639623 protein_coding
ENSMUST00000111380 (Rxrg-004) 167618309-167639621 protein_coding
ENSMUST00000111384 (Rxrg-003) 167598480-167639618 protein_coding
ENSMUST00000111386 (Rxrg-002) 167598460-167639424 protein_coding
ENSMUSG00000026686 (Lmx1a)
LIM homeobox transcription factor 1 alpha 		ENSMUST00000028003 (Lmx1a-001) 167689557-167848741 protein_coding
ENSMUST00000111377 (Lmx1a-002) 167689237-167848741 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MM_0001ENSDARG00000004697ENSDART00000002554ENSDARG00000012656ENSDART00000007700ENSDART00000153018ENSDARG00000020354ENSDART00000019059ENSDART00000139609ENSDART00000146292CIL_0005MM_0002ENSMUSG00000015843ENSMUST00000015987ENSMUST00000111380ENSMUST00000111384ENSMUST00000111386ENSMUSG00000026686ENSMUST00000028003ENSMUST00000111377
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005MM_0001ENSDARG00000004697ENSDART00000002554ENSDARG00000012656ENSDART00000007700ENSDARG00000020354ENSDART00000019059ENSDART00000139609ENSDART00000146292CIL_0005MM_0002ENSMUSG00000015843ENSMUST00000015987ENSMUST00000111380ENSMUST00000111384ENSMUST00000111386ENSMUSG00000026686ENSMUST00000028003ENSMUST00000111377
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004697 ENSDART00000002554 N/A N/A N/A N/A N/A N/A 4.134±1.03 3.334±0.00 2.868±0.00 N/A 5.191±0.00 N/A N/A N/A
ENSDARG00000012656 ENSDART00000007700 N/A N/A N/A 7.852±5.81 N/A N/A 5.353±0.58 6.436±3.32 4.658±0.00 N/A 2.921±0.00 N/A N/A N/A
ENSDART00000153018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000020354 ENSDART00000019059 N/A N/A N/A 0.743±0.45 N/A N/A 0.635±0.20 1.619±0.00 0.191±0.00 N/A 0.264±0.00 N/A N/A N/A
ENSDART00000139609 N/A N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A
ENSDART00000146292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.156±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015843 ENSMUST00000015987 N/A N/A 0.634±0.04 2.887±0.53 1.540±0.33 0.277±0.06 N/A N/A 0.039±0.02 0.441±0.00 6.984±1.74 0.244±0.18 0.025±0.00 N/A
ENSMUST00000111380 6.424±3.44 1.695±0.53 0.230±0.05 4.712±0.00 7.424±3.41 0.146±0.00 34.383±3.98 0.982±0.19 3.529±2.58 1.079±0.49 19.941±3.15 0.404±0.18 0.067±0.02 0.285±0.25
ENSMUST00000111384 N/A N/A N/A 1.948±0.00 N/A 0.239±0.08 N/A N/A 0.038±0.02 N/A 4.295±1.20 N/A N/A N/A
ENSMUST00000111386 N/A 0.544±0.09 0.325±0.10 0.852±0.35 N/A 0.186±0.05 N/A 0.293±0.03 0.034±0.03 0.269±0.12 3.375±0.00 0.229±0.06 0.049±0.01 0.214±0.08
ENSMUSG00000026686 ENSMUST00000028003 0.050±0.01 0.040±0.00 0.026±0.00 2.848±1.31 0.206±0.05 0.863±0.20 N/A N/A N/A N/A N/A 0.101±0.06 N/A N/A
ENSMUST00000111377 0.044±0.01 N/A 0.016±0.00 0.082±0.00 0.087±0.04 N/A 0.018±0.00 0.027±0.01 0.048±0.03 0.013±0.00 0.048±0.02 0.064±0.03 1.216±1.26 0.034±0.02

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