C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: LIM homeobox transcription factor 1, alpha
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162761 LMX1A 9606 - 1:165201867-165356715 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000294816 LMX1A-002 165201873-165356241 protein_coding
  ENST00000342310 LMX1A-001 165201867-165356715 protein_coding
  ENST00000367893 LMX1A-003 165203874-165355746 protein_coding
  ENST00000489443 LMX1A-004 165203408-165213280 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryTestisENST00000294816ENST00000342310ENST00000367893ENST00000489443
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Testis
ENST00000294816 0.039±0.00 0.047±0.00 0.049±0.04 0.252±0.00 0.094±0.00 0.012±0.00 0.104±0.09 0.012±0.00 N/A 0.023±0.01 0.317±0.04
ENST00000342310 N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 N/A 0.243±0.00
ENST00000367893 N/A 0.041±0.00 0.080±0.02 0.208±0.00 0.202±0.00 0.021±0.00 N/A N/A N/A 0.048±0.00 0.340±0.00
ENST00000489443 N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.140±0.00 N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001558 IEA regulation of cell growth
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007411 IEA axon guidance
GO:0007417 IEA central nervous system development
GO:0007420 IEA brain development
GO:0008270 IEA zinc ion binding
GO:0010468 IEA regulation of gene expression
GO:0021542 IEA dentate gyrus development
GO:0021549 IEA cerebellum development
GO:0021766 IEA hippocampus development
GO:0021953 IEA central nervous system neuron differentiation
GO:0030182 IEA neuron differentiation
GO:0030901 IEA midbrain development
GO:0043565 IEA sequence-specific DNA binding
GO:0045665 IEA negative regulation of neuron differentiation
GO:0071542 IEA dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020354 lmx1a LIM homeobox transcription factor 1, alpha protein_coding Danio_rerio
ENSMUSG00000026686 Lmx1a LIM homeobox transcription factor 1 alpha protein_coding Mus_musculus

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