C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ryanodine receptor 1b (skeletal)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000023797 ryr1b 7955 - 18:33835785-34021041 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000036015 ryr1b-201 33835785-34021041 protein_coding
  ENSDART00000150278 ryr1b-006 33854785-33861085 protein_coding
  ENSDART00000150351 ryr1b-003 33905581-33909708 retained_intron
  ENSDART00000150506 ryr1b-002 33906321-33909597 retained_intron
  ENSDART00000150542 ryr1b-005 33888588-33892370 retained_intron
  ENSDART00000150755 ryr1b-004 33900430-33906620 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000036015ENSDART00000150351
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000036015 4.441±2.61 1.282±1.32 1.055±1.03 0.019±0.00 6.032±0.00
ENSDART00000150351 N/A N/A N/A 0.102±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UX CIL_0006UX_0001 CGP 18:33835785-34142319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0008345 IMP larval locomotory behavior
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0031443 IMP fast-twitch skeletal muscle fiber contraction
GO:0034599 IMP cellular response to oxidative stress
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000196218 RYR1 ryanodine receptor 1 (skeletal) protein_coding Homo_sapiens
ENSMUSG00000030592 Ryr1 ryanodine receptor 1, skeletal muscle protein_coding Mus_musculus

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