C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ryanodine receptor 1b (skeletal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000036015 ryr1b-201 ENSDARG00000023797 7955 - 18:33835785-34021041 protein_coding

Danio rerio EnsemblZv9

Genome
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000036015
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000036015 4.441±2.61 1.282±1.32 1.055±1.03 0.019±0.00 6.032±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UX CIL_0006UX_0001 CGP 18:33835785-34142319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005219 IEA ryanodine-sensitive calcium-release channel activity
GO:0005262 IEA calcium channel activity
GO:0005488 IEA binding
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0008345 IMP larval locomotory behavior
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane
GO:0031443 IMP fast-twitch skeletal muscle fiber contraction
GO:0034599 IMP cellular response to oxidative stress
GO:0055085 IEA transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021750 Ryr2-201 protein_coding Mus_musculus 0 732
ENSMUST00000032813 Ryr1-201 protein_coding Mus_musculus 0 3240
ENSMUST00000170156 Ryr2-202 protein_coding Mus_musculus 0 732
ENSMUST00000179893 Ryr1-202 protein_coding Mus_musculus 0 3273
ENST00000355481 RYR1-001 protein_coding Homo_sapiens 0 3367
ENST00000359596 RYR1-010 protein_coding Homo_sapiens 0 3415
ENST00000360985 RYR1-201 protein_coding Homo_sapiens 0 3367
ENST00000389232 RYR3-001 protein_coding Homo_sapiens 0 448
ENST00000415757 RYR3-002 protein_coding Homo_sapiens 0 448
ENST00000594335 RYR1-002 nonsense_mediated_decay Homo_sapiens 0 1864
ENST00000599547 RYR1-003 protein_coding Homo_sapiens 0 841
ENST00000601514 RYR1-006 protein_coding Homo_sapiens 0 340
ENST00000622037 RYR3-201 protein_coding Homo_sapiens 0 448

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