C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006UX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000023797-ENSDARG00000061796 CGP 7955 18:33835785-34142319
GeneTranscriptPositionBiotype
ENSDARG00000023797 (ryr1b)
ryanodine receptor 1b (skeletal) 		ENSDART00000036015 (ryr1b-201) 33835785-34021041 protein_coding
ENSDART00000150278 (ryr1b-006) 33854785-33861085 protein_coding
ENSDART00000150351 (ryr1b-003) 33905581-33909708 retained_intron
ENSDART00000150506 (ryr1b-002) 33906321-33909597 retained_intron
ENSDART00000150542 (ryr1b-005) 33888588-33892370 retained_intron
ENSDART00000150755 (ryr1b-004) 33900430-33906620 protein_coding
ENSDARG00000061796 (rasgrp4)
RAS guanyl releasing protein 4 		ENSDART00000088504 (rasgrp4-201) 34082860-34141434 protein_coding
ENSDART00000140386 (rasgrp4-001) 34082674-34142319 protein_coding
CIL_0006UX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030592-ENSMUSG00000030589 CGP 10090 7:29003340-29153961
GeneTranscriptPositionBiotype
ENSMUSG00000030589 (Rasgrp4)
RAS guanyl releasing protein 4 		ENSMUST00000032811 (Rasgrp4-001) 29134933-29153961 protein_coding
ENSMUST00000094617 (Rasgrp4-201) 29134933-29153939 protein_coding
ENSMUST00000159351 (Rasgrp4-005) 29135073-29151499 nonsense_mediated_decay
ENSMUST00000159898 (Rasgrp4-004) 29134982-29150978 retained_intron
ENSMUST00000159975 (Rasgrp4-002) 29134933-29151615 protein_coding
ENSMUST00000160194 (Rasgrp4-006) 29135006-29148547 protein_coding
ENSMUST00000160396 (Rasgrp4-007) 29150196-29151619 protein_coding
ENSMUST00000161522 (Rasgrp4-008) 29134854-29150291 protein_coding
ENSMUST00000162946 (Rasgrp4-003) 29134933-29149316 retained_intron
ENSMUSG00000030592 (Ryr1)
ryanodine receptor 1, skeletal muscle 		ENSMUST00000032813 (Ryr1-201) 29003344-29125151 protein_coding
ENSMUST00000179893 (Ryr1-202) 29003340-29125151 protein_coding
ENSMUSG00000097079 (Gm26604)
predicted gene, 26604 		ENSMUST00000180926 (Gm26604-201) 29071603-29081134 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006UX_0001ENSDARG00000023797ENSDART00000036015ENSDART00000150278ENSDART00000150351ENSDART00000150506ENSDART00000150542ENSDART00000150755ENSDARG00000061796ENSDART00000088504ENSDART00000140386CIL_0006UX_0002ENSMUSG00000030589ENSMUST00000032811ENSMUST00000094617ENSMUST00000159351ENSMUST00000159898ENSMUST00000159975ENSMUST00000160194ENSMUST00000160396ENSMUST00000161522ENSMUST00000162946ENSMUSG00000030592ENSMUST00000032813ENSMUST00000179893ENSMUSG00000097079ENSMUST00000180926
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006UX_0001ENSDARG00000023797ENSDART00000036015ENSDART00000150351ENSDARG00000061796ENSDART00000088504ENSDART00000140386CIL_0006UX_0002ENSMUSG00000030589ENSMUST00000032811ENSMUST00000159898ENSMUST00000159975ENSMUST00000161522ENSMUST00000162946ENSMUSG00000030592ENSMUST00000032813ENSMUST00000179893ENSMUSG00000097079ENSMUST00000180926
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000023797 ENSDART00000036015 N/A N/A N/A 4.441±2.61 N/A N/A 1.282±1.32 1.055±1.03 0.019±0.00 N/A 6.032±0.00 N/A N/A N/A
ENSDART00000150278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150351 N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A N/A
ENSDART00000150506 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000150755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061796 ENSDART00000088504 N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A N/A N/A
ENSDART00000140386 N/A N/A N/A 0.987±0.11 N/A N/A 1.042±0.25 N/A 0.075±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030589 ENSMUST00000032811 2.158±0.31 N/A N/A N/A 2.098±0.63 N/A 0.690±0.00 N/A 0.732±0.11 2.114±0.12 N/A N/A 0.439±0.11 N/A
ENSMUST00000094617 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159898 1.867±0.00 N/A N/A N/A 1.750±0.00 N/A N/A N/A 0.980±0.30 N/A N/A 1.103±0.00 0.800±0.20 N/A
ENSMUST00000159975 3.140±0.01 N/A N/A N/A 7.068±1.81 N/A N/A N/A 1.927±0.35 4.060±0.22 N/A 4.155±1.24 2.363±1.53 N/A
ENSMUST00000160194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.824±0.00 N/A
ENSMUST00000162946 3.323±0.00 N/A N/A N/A 5.002±0.24 N/A N/A N/A 1.545±0.38 N/A N/A 5.718±1.81 1.553±0.00 N/A
ENSMUSG00000030592 ENSMUST00000032813 0.012±0.00 0.011±0.01 N/A N/A 0.068±0.01 0.026±0.01 0.003±0.00 0.003±0.00 0.024±0.05 0.035±0.00 N/A 0.157±0.10 0.118±0.08 0.424±0.00
ENSMUST00000179893 0.012±0.00 0.011±0.01 N/A 0.835±0.40 11.464±11.79 0.026±0.01 0.003±0.00 0.537±0.54 0.010±0.01 1.420±1.38 259.542±27.55 0.125±0.03 0.055±0.04 N/A
ENSMUSG00000097079 ENSMUST00000180926 N/A N/A N/A N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A

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