C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short stature homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000025891 shox 7955 + 9:35612541-35621451 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000029238 shox-201 35612655-35621451 protein_coding
  ENSDART00000100735 shox-202 35612541-35618985 protein_coding
  ENSDART00000133996 shox-001 35612541-35618999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000029238ENSDART00000100735
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000029238 13.485±4.51 0.096±0.06 0.132±0.03 N/A 0.520±0.00
ENSDART00000100735 N/A 0.133±0.00 0.432±0.00 0.036±0.00 0.822±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027Q CIL_00027Q_0001 CGP 9:35455758-35621451
CIL_0007KJ CIL_0007KJ_0004 UCNEbase 9:35531966-35679719

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000185960 SHOX short stature homeobox protein_coding Homo_sapiens

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