C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: short stature homeobox
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000185960 SHOX 9606 + X:624344-659411 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334060 SHOX-201 624344-659411 protein_coding
  ENST00000381575 SHOX-001 630807-659411 protein_coding
  ENST00000381578 SHOX-202 624344-646823 protein_coding
  ENST00000554971 SHOX-003 630807-645568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334060ENST00000381575ENST00000381578ENST00000554971
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334060 N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A
ENST00000381575 0.230±0.00 0.255±0.00 0.181±0.00 N/A 0.063±0.00 0.052±0.00 0.091±0.00 0.031±0.00 0.049±0.00 N/A 0.061±0.01 0.058±0.00 0.224±0.08
ENST00000381578 0.137±0.00 0.083±0.00 0.031±0.00 0.130±0.00 0.100±0.00 0.010±0.00 0.056±0.00 0.032±0.00 0.039±0.00 N/A 0.018±0.00 0.028±0.00 0.057±0.02
ENST00000554971 0.725±0.00 N/A 0.054±0.00 N/A 0.062±0.00 N/A 0.312±0.00 0.061±0.00 0.042±0.00 0.229±0.00 0.024±0.00 0.267±0.02 0.155±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00027Q CIL_00027Q_0002 CGP X:333963-659411

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025891 shox short stature homeobox protein_coding Danio_rerio

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