C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00027Q_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076004-ENSDARG00000025891 CGP 7955 9:35455758-35621451
GeneTranscriptPositionBiotype
ENSDARG00000025891 (shox)
short stature homeobox 		ENSDART00000029238 (shox-201) 35612655-35621451 protein_coding
ENSDART00000100735 (shox-202) 35612541-35618985 protein_coding
ENSDART00000133996 (shox-001) 35612541-35618999 protein_coding
ENSDARG00000076004 (ppp2r3b)
protein phosphatase 2, regulatory subunit B'', beta 		ENSDART00000113656 (ppp2r3b-001) 35455758-35478984 protein_coding
ENSDART00000114043 (ppp2r3b-002) 35459467-35471501 protein_coding
ENSDART00000141078 (ppp2r3b-003) 35462361-35463478 retained_intron
CIL_00027Q_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000167393-ENSG00000185960 CGP 9606 X:333963-659411
GeneTranscriptPositionBiotype
ENSG00000167393 (PPP2R3B)
protein phosphatase 2, regulatory subunit B'', beta 		ENST00000381625 (PPP2R3B-002) 347611-374044 protein_coding
ENST00000390665 (PPP2R3B-001) 333963-386710 protein_coding
ENST00000445792 (PPP2R3B-007) 344896-386955 retained_intron
ENST00000468169 (PPP2R3B-006) 338613-345629 retained_intron
ENST00000475859 (PPP2R3B-009) 346720-347838 retained_intron
ENST00000477110 (PPP2R3B-003) 334239-347324 retained_intron
ENST00000477636 (PPP2R3B-005) 341911-346514 retained_intron
ENST00000479438 (PPP2R3B-008) 334235-341711 retained_intron
ENST00000484364 (PPP2R3B-004) 340765-345626 retained_intron
ENST00000496630 (PPP2R3B-010) 346637-361516 retained_intron
ENSG00000185960 (SHOX)
short stature homeobox 		ENST00000334060 (SHOX-201) 624344-659411 protein_coding
ENST00000381575 (SHOX-001) 630807-659411 protein_coding
ENST00000381578 (SHOX-202) 624344-646823 protein_coding
ENST00000554971 (SHOX-003) 630807-645568 protein_coding
ENSG00000275287 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000610676 (Metazoa_SRP.1-315) 388100-388389 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027Q_0001ENSDARG00000025891ENSDART00000029238ENSDART00000100735ENSDART00000133996ENSDARG00000076004ENSDART00000113656ENSDART00000114043ENSDART00000141078CIL_00027Q_0002ENSG00000167393ENST00000381625ENST00000390665ENST00000445792ENST00000468169ENST00000475859ENST00000477110ENST00000477636ENST00000479438ENST00000484364ENST00000496630ENSG00000185960ENST00000334060ENST00000381575ENST00000381578ENST00000554971ENSG00000275287ENST00000610676
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00027Q_0001ENSDARG00000025891ENSDART00000029238ENSDART00000100735ENSDARG00000076004ENSDART00000113656ENSDART00000114043ENSDART00000141078CIL_00027Q_0002ENSG00000167393ENST00000381625ENST00000390665ENST00000445792ENST00000468169ENST00000477110ENST00000477636ENST00000479438ENST00000484364ENSG00000185960ENST00000334060ENST00000381575ENST00000381578ENST00000554971ENSG00000275287ENST00000610676
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000025891 ENSDART00000029238 N/A N/A N/A 13.485±4.51 N/A N/A 0.096±0.06 0.132±0.03 N/A N/A 0.520±0.00 N/A N/A N/A
ENSDART00000100735 N/A N/A N/A N/A N/A N/A 0.133±0.00 0.432±0.00 0.036±0.00 N/A 0.822±0.00 N/A N/A N/A
ENSDART00000133996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000076004 ENSDART00000113656 N/A N/A N/A 1.871±1.51 N/A N/A 5.386±3.28 1.919±1.50 0.116±0.00 N/A 0.109±0.00 N/A N/A N/A
ENSDART00000114043 N/A N/A N/A 3.650±0.53 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000141078 N/A N/A N/A N/A N/A N/A N/A 0.097±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000167393 ENST00000381625 N/A N/A 0.129±0.00 N/A 0.670±0.00 N/A 5.416±0.00 N/A 2.172±0.00 N/A 21.376±4.16 N/A N/A N/A
ENST00000390665 0.811±0.00 1.968±0.00 N/A 1.104±0.22 1.859±1.59 0.819±0.08 0.630±0.00 1.049±0.00 0.718±0.00 0.994±0.80 10.960±0.00 3.490±2.06 5.362±1.55 8.867±0.83
ENST00000445792 N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A 0.351±0.00 N/A N/A
ENST00000468169 0.587±0.00 3.069±0.00 N/A 1.381±0.00 N/A 1.091±0.00 N/A 0.388±0.00 0.830±0.00 N/A 9.372±1.74 5.509±0.00 7.443±0.00 10.433±5.34
ENST00000475859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477110 0.240±0.00 0.591±0.00 0.041±0.00 0.302±0.00 0.495±0.34 0.171±0.03 N/A N/A 0.102±0.01 0.208±0.04 N/A 0.666±0.39 N/A 0.811±0.00
ENST00000477636 N/A N/A N/A N/A N/A N/A N/A N/A 1.675±0.00 N/A N/A 9.336±0.00 N/A N/A
ENST00000479438 N/A 2.390±0.00 0.057±0.00 N/A N/A N/A N/A 1.957±0.00 0.638±0.00 N/A N/A 4.203±0.87 4.295±0.00 8.127±4.25
ENST00000484364 N/A N/A N/A 1.009±0.02 N/A N/A N/A N/A N/A 0.576±0.00 N/A N/A N/A N/A
ENST00000496630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000185960 ENST00000334060 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A
ENST00000381575 0.230±0.00 0.255±0.00 N/A 0.181±0.00 N/A 0.063±0.00 0.052±0.00 0.091±0.00 0.031±0.00 0.049±0.00 N/A 0.061±0.01 0.058±0.00 0.224±0.08
ENST00000381578 0.137±0.00 0.083±0.00 N/A 0.031±0.00 0.130±0.00 0.100±0.00 0.010±0.00 0.056±0.00 0.032±0.00 0.039±0.00 N/A 0.018±0.00 0.028±0.00 0.057±0.02
ENST00000554971 0.725±0.00 N/A N/A 0.054±0.00 N/A 0.062±0.00 N/A 0.312±0.00 0.061±0.00 0.042±0.00 0.229±0.00 0.024±0.00 0.267±0.02 0.155±0.00
ENSG00000275287 ENST00000610676 0.645±0.00 0.847±0.00 N/A 0.662±0.00 0.323±0.00 0.594±0.00 0.186±0.00 0.475±0.00 0.057±0.00 0.469±0.00 0.346±0.00 2.022±0.00 N/A 0.782±0.00

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