C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group AT-hook 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000028335 hmga1a 7955 - 23:3765200-3773434 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000028885 hmga1a-001 3765200-3773434 protein_coding
  ENSDART00000131536 hmga1a-007 3766784-3772379 protein_coding
  ENSDART00000132205 hmga1a-003 3766721-3773088 protein_coding
  ENSDART00000136394 hmga1a-005 3771531-3773178 retained_intron
  ENSDART00000137707 hmga1a-004 3766604-3773199 processed_transcript
  ENSDART00000137826 hmga1a-002 3765485-3772617 protein_coding
  ENSDART00000139408 hmga1a-006 3770960-3772458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000028885ENSDART00000137826
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000028885 4.358±0.60 0.105±0.00 N/A 1.046±0.00 1.806±0.00
ENSDART00000137826 9.448±2.56 1.441±0.57 5.103±0.00 2.370±0.00 6.681±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000137309 HMGA1 high mobility group AT-hook 1 protein_coding Homo_sapiens
ENSMUSG00000046711 Hmga1 high mobility group AT-hook 1 protein_coding Mus_musculus
ENSMUSG00000078249 Hmga1-rs1 high mobility group AT-hook I, related sequence 1 protein_coding Mus_musculus

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