C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group AT-hook I, related sequence 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000078249 Hmga1-rs1 10090 + 11:120762794-120764419 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000105046 Hmga1-rs1-001 120762794-120764419 protein_coding
  ENSMUST00000178955 Hmga1-rs1-002 120763643-120763762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105046
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105046 0.344±0.26 0.495±0.25 3.280±3.01 7.116±3.86 0.102±0.07 0.282±0.09 0.105±0.01 0.066±0.04 7.382±13.29 0.130±0.03 0.078±0.03 0.498±0.35 2.416±4.35 0.858±0.27

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008134 ISS transcription factor binding
GO:0008285 ISS negative regulation of cell proliferation
GO:0030374 ISS ligand-dependent nuclear receptor transcription coactivator activity
GO:0035985 ISS senescence-associated heterochromatin focus
GO:0035986 ISS senescence-associated heterochromatin focus assembly
GO:0042974 ISS retinoic acid receptor binding
GO:0042975 ISS peroxisome proliferator activated receptor binding
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046965 ISS retinoid X receptor binding
GO:0090402 ISS oncogene-induced cell senescence
GO:2000774 ISS positive regulation of cellular senescence

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028335 hmga1a high mobility group AT-hook 1a protein_coding Danio_rerio
ENSDARG00000070951 hmga1b high mobility group AT-hook 1b protein_coding Danio_rerio
ENSG00000137309 HMGA1 high mobility group AT-hook 1 protein_coding Homo_sapiens

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