C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000028971 cpsf2 7955 + 20:50365142-50398350 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000047212 cpsf2-201 50365142-50398344 protein_coding
  ENSDART00000137725 cpsf2-001 50374145-50398350 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000047212ENSDART00000137725
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000047212 5.468±1.60 5.386±0.65 5.653±0.00 2.177±0.00 1.974±0.00
ENSDART00000137725 0.825±0.73 1.266±0.00 0.925±0.45 N/A 0.742±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LF CIL_0002LF_0001 CGP 20:50361663-50398350
CIL_0002N4 CIL_0002N4_0001 CGP 20:50365142-50510462

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005847 IEA mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 IEA mRNA polyadenylation
GO:0006379 IEA mRNA cleavage
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000165934 CPSF2 cleavage and polyadenylation specific factor 2, 100kDa protein_coding Homo_sapiens
ENSMUSG00000041781 Cpsf2 cleavage and polyadenylation specific factor 2 protein_coding Mus_musculus

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