C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 2, 100kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165934 CPSF2 9606 + 14:92121937-92172145 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000298875 CPSF2-001 92121937-92172145 protein_coding
  ENST00000553427 CPSF2-004 92121972-92134103 protein_coding
  ENST00000554290 CPSF2-005 92121985-92135432 nonsense_mediated_decay
  ENST00000555244 CPSF2-007 92155179-92161246 protein_coding
  ENST00000556622 CPSF2-006 92154021-92155153 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000298875ENST00000555244
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000298875 2.613±0.00 2.676±0.00 1.643±0.00 1.829±0.00 2.501±0.78 2.379±0.42 1.301±0.28 1.897±0.30 2.207±0.65 1.423±0.80 1.814±0.89 2.237±0.26 2.077±0.67 4.901±0.90
ENST00000555244 9.271±0.00 10.505±0.00 N/A 9.911±0.00 7.649±0.00 9.613±0.00 6.160±0.00 6.866±2.56 7.186±0.00 11.248±0.00 6.930±3.12 7.636±1.69 7.111±3.64 23.998±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002LF CIL_0002LF_0002 CGP 14:92116122-92172145
CIL_0002N4 CIL_0002N4_0002 CGP 14:92121937-92501483

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005847 IEA:IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 IEA mRNA polyadenylation
GO:0006379 IEA mRNA cleavage
GO:0006398 IDA histone mRNA 3'-end processing
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028971 cpsf2 cleavage and polyadenylation specific factor 2 protein_coding Danio_rerio
ENSMUSG00000041781 Cpsf2 cleavage and polyadenylation specific factor 2 protein_coding Mus_musculus

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