C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sine oculis homeobox homolog 1a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000039304 six1a 7955 - 13:31843563-31845797 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000057432 six1a-001 31843563-31845797 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000057432
Transcript ID Brain Heart Kidney Muscle
ENSDART00000057432 0.469±0.22 0.037±0.00 1.198±0.70 10.202±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00036B CIL_00036B_0001 CGP 13:31806636-31845797
CIL_0006SM CIL_0006SM_0001 CGP 13:31843563-31870925

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000976 IEA transcription regulatory region sequence-specific DNA binding
GO:0000981 IMP sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0006366 IMP transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding
GO:2000980 IMP regulation of inner ear receptor cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000126778 SIX1 SIX homeobox 1 protein_coding Homo_sapiens
ENSMUSG00000051367 Six1 sine oculis-related homeobox 1 protein_coding Mus_musculus

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