C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000039304-ENSDARG00000004695 CGP 7955 13:31843563-31870925
GeneTranscriptPositionBiotype
ENSDARG00000004695 (six4a)
sine oculis homeobox homolog 4a 		ENSDART00000125987 (six4a-201) 31860330-31870591 protein_coding
ENSDART00000135381 (six4a-001) 31860334-31870925 protein_coding
ENSDART00000143903 (six4a-002) 31860334-31870608 nonsense_mediated_decay
ENSDARG00000039304 (six1a)
sine oculis homeobox homolog 1a 		ENSDART00000057432 (six1a-001) 31843563-31845797 protein_coding
CIL_0006SM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000126778-ENSG00000100625 CGP 9606 14:60643415-60724348
GeneTranscriptPositionBiotype
ENSG00000100625 (SIX4)
SIX homeobox 4 		ENST00000216513 (SIX4-001) 60709528-60724134 protein_coding
ENST00000554079 (SIX4-002) 60713167-60723165 processed_transcript
ENST00000556952 (SIX4-004) 60719802-60724348 protein_coding
ENSG00000126778 (SIX1)
SIX homeobox 1 		ENST00000247182 (SIX1-001) 60643415-60649462 protein_coding
ENST00000553535 (SIX1-002) 60645270-60653026 processed_transcript
ENST00000554986 (SIX1-005) 60644696-60658259 protein_coding
ENST00000555627 (SIX1-003) 60651775-60653079 retained_intron
ENST00000555955 (SIX1-004) 60644931-60653131 retained_intron
CIL_0006SM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000051367-ENSMUSG00000034460 CGP 10090 12:73040015-73113456
GeneTranscriptPositionBiotype
ENSMUSG00000034460 (Six4)
sine oculis-related homeobox 4 		ENSMUST00000043208 (Six4-001) 73099609-73113425 protein_coding
ENSMUST00000175693 (Six4-002) 73103441-73113456 protein_coding
ENSMUSG00000051367 (Six1)
sine oculis-related homeobox 1 		ENSMUST00000050029 (Six1-001) 73041827-73047179 protein_coding
ENSMUST00000175677 (Six1-002) 73043774-73045291 processed_transcript
ENSMUST00000176091 (Six1-003) 73043531-73053887 processed_transcript
ENSMUST00000176310 (Six1-004) 73040015-73042815 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SM_0001ENSDARG00000004695ENSDART00000125987ENSDART00000135381ENSDART00000143903ENSDARG00000039304ENSDART00000057432CIL_0006SM_0002ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000126778ENST00000247182ENST00000553535ENST00000554986ENST00000555627ENST00000555955CIL_0006SM_0003ENSMUSG00000034460ENSMUST00000043208ENSMUST00000175693ENSMUSG00000051367ENSMUST00000050029ENSMUST00000175677ENSMUST00000176091ENSMUST00000176310
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SM_0001ENSDARG00000004695ENSDART00000125987ENSDART00000135381ENSDART00000143903ENSDARG00000039304ENSDART00000057432CIL_0006SM_0002ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000126778ENST00000247182ENST00000553535ENST00000554986CIL_0006SM_0003ENSMUSG00000034460ENSMUST00000043208ENSMUST00000175693ENSMUSG00000051367ENSMUST00000050029ENSMUST00000176091ENSMUST00000176310
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000004695 ENSDART00000125987 N/A N/A N/A 0.056±0.02 N/A N/A 0.034±0.01 0.128±0.00 N/A N/A 9.764±0.00 N/A N/A N/A
ENSDART00000135381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.931±0.00 N/A N/A N/A
ENSDART00000143903 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000039304 ENSDART00000057432 N/A N/A N/A 0.469±0.22 N/A N/A 0.037±0.00 1.198±0.70 N/A N/A 10.202±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100625 ENST00000216513 0.252±0.00 0.072±0.00 0.073±0.00 0.185±0.00 0.441±0.00 0.166±0.00 0.016±0.00 0.588±0.00 N/A 0.696±0.00 3.191±0.00 0.589±0.36 0.297±0.08 0.443±0.00
ENST00000554079 N/A N/A N/A 0.120±0.00 1.041±0.00 N/A N/A N/A 0.101±0.00 N/A 0.789±0.00 N/A N/A N/A
ENST00000556952 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.314±0.00 N/A
ENSG00000126778 ENST00000247182 0.685±0.00 N/A N/A 0.045±0.01 0.558±0.43 N/A N/A N/A 0.239±0.00 0.612±0.34 4.117±2.89 0.389±0.24 0.025±0.01 0.622±0.31
ENST00000553535 0.412±0.00 0.213±0.00 N/A 0.089±0.08 3.272±0.00 0.067±0.00 0.021±0.00 N/A N/A 1.619±0.00 6.749±5.43 0.363±0.32 0.022±0.02 1.201±0.00
ENST00000554986 1.292±0.00 0.060±0.00 N/A N/A 1.107±0.73 N/A 0.015±0.00 0.083±0.00 N/A 1.200±0.00 5.405±3.54 0.683±0.78 0.045±0.01 2.000±1.04
ENST00000555627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034460 ENSMUST00000043208 0.344±0.22 0.143±0.05 0.379±0.01 0.073±0.00 N/A 0.118±0.04 0.323±0.00 0.248±0.20 0.010±0.00 0.514±0.23 0.596±0.19 0.842±0.05 0.092±0.08 0.029±0.00
ENSMUST00000175693 0.106±0.07 0.103±0.04 N/A 0.044±0.02 0.168±0.00 0.079±0.04 N/A 0.072±0.00 0.007±0.00 0.265±0.04 N/A 0.420±0.19 0.023±0.01 0.031±0.01
ENSMUSG00000051367 ENSMUST00000050029 2.302±1.44 0.984±0.44 0.521±0.00 0.120±0.08 1.790±0.75 0.016±0.00 0.222±0.07 0.210±0.04 0.050±0.07 1.455±0.17 15.376±2.72 0.287±0.21 0.042±0.04 0.321±0.14
ENSMUST00000175677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.05 0.166±0.06 N/A
ENSMUST00000176310 N/A N/A N/A N/A 1.163±0.00 N/A N/A N/A 0.021±0.00 N/A 12.382±0.00 N/A N/A N/A

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