C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00036B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000025187-ENSDARG00000039304 CGP 7955 13:31806636-31845797
GeneTranscriptPositionBiotype
ENSDARG00000025187 (six6a)
sine oculis-related homeobox 6a 		ENSDART00000030646 (six6a-001) 31827590-31829849 protein_coding
ENSDART00000111763 (six6a-002) 31806636-31829584 protein_coding
ENSDARG00000039304 (six1a)
sine oculis homeobox homolog 1a 		ENSDART00000057432 (six1a-001) 31843563-31845797 protein_coding
CIL_00036B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184302-ENSG00000126778 CGP 9606 14:60508951-60658259
GeneTranscriptPositionBiotype
ENSG00000126778 (SIX1)
SIX homeobox 1 		ENST00000247182 (SIX1-001) 60643415-60649462 protein_coding
ENST00000553535 (SIX1-002) 60645270-60653026 processed_transcript
ENST00000554986 (SIX1-005) 60644696-60658259 protein_coding
ENST00000555627 (SIX1-003) 60651775-60653079 retained_intron
ENST00000555955 (SIX1-004) 60644931-60653131 retained_intron
ENSG00000179008 (C14orf39)
chromosome 14 open reading frame 39 		ENST00000321731 (C14orf39-001) 60435956-60486096 protein_coding
ENST00000498565 (C14orf39-002) 60396469-60455050 nonsense_mediated_decay
ENST00000555476 (C14orf39-004) 60471632-60486044 protein_coding
ENST00000556799 (C14orf39-005) 60478357-60515543 protein_coding
ENST00000557138 (C14orf39-003) 60436623-60486019 nonsense_mediated_decay
ENSG00000184302 (SIX6)
SIX homeobox 6 		ENST00000327720 (SIX6-001) 60508951-60512850 protein_coding
ENSG00000241354 (RP11-1042B17.2)
 ENST00000489560 (RP11-1042B17.2-001) 60602146-60602533 processed_pseudogene
ENSG00000244756 (RP11-1042B17.1)
 ENST00000492636 (RP11-1042B17.1-001) 60572024-60572311 processed_pseudogene
ENSG00000258670 (RP11-1042B17.3)
 ENST00000557618 (RP11-1042B17.3-001) 60515119-60554916 antisense
ENSG00000258764 (RP11-1042B17.4)
 ENST00000557593 (RP11-1042B17.4-001) 60544400-60544654 transcribed_processed_pseudogene
ENSG00000258952 (RP11-1042B17.5)
 ENST00000555871 (RP11-1042B17.5-001) 60640730-60642589 lincRNA
CIL_00036B_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021099-ENSMUSG00000051367 CGP 10090 12:72939892-73053887
GeneTranscriptPositionBiotype
ENSMUSG00000021098 (4930447C04Rik)
RIKEN cDNA 4930447C04 gene 		ENSMUST00000044000 (4930447C04Rik-001) 72881109-72917906 protein_coding
ENSMUST00000110489 (4930447C04Rik-201) 72881109-72917760 protein_coding
ENSMUST00000130635 (4930447C04Rik-005) 72913187-72937977 protein_coding
ENSMUST00000131033 (4930447C04Rik-002) 72906234-72917857 nonsense_mediated_decay
ENSMUST00000132016 (4930447C04Rik-007) 72892924-72906271 processed_transcript
ENSMUST00000132067 (4930447C04Rik-003) 72913191-72940083 protein_coding
ENSMUST00000132901 (4930447C04Rik-008) 72892870-72906473 retained_intron
ENSMUST00000136075 (4930447C04Rik-004) 72911659-72940774 protein_coding
ENSMUST00000143960 (4930447C04Rik-006) 72892816-72906277 nonsense_mediated_decay
ENSMUSG00000021099 (Six6)
sine oculis-related homeobox 6 		ENSMUST00000021519 (Six6-001) 72939892-72944899 protein_coding
ENSMUSG00000051367 (Six1)
sine oculis-related homeobox 1 		ENSMUST00000050029 (Six1-001) 73041827-73047179 protein_coding
ENSMUST00000175677 (Six1-002) 73043774-73045291 processed_transcript
ENSMUST00000176091 (Six1-003) 73043531-73053887 processed_transcript
ENSMUST00000176310 (Six1-004) 73040015-73042815 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036B_0001ENSDARG00000025187ENSDART00000030646ENSDART00000111763ENSDARG00000039304ENSDART00000057432CIL_00036B_0002ENSG00000126778ENST00000247182ENST00000553535ENST00000554986ENST00000555627ENST00000555955ENSG00000179008ENST00000321731ENST00000498565ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000241354ENST00000489560ENSG00000244756ENST00000492636ENSG00000258670ENST00000557618ENSG00000258764ENST00000557593ENSG00000258952ENST00000555871CIL_00036B_0003ENSMUSG00000021098ENSMUST00000044000ENSMUST00000110489ENSMUST00000130635ENSMUST00000131033ENSMUST00000132016ENSMUST00000132067ENSMUST00000132901ENSMUST00000136075ENSMUST00000143960ENSMUSG00000021099ENSMUST00000021519ENSMUSG00000051367ENSMUST00000050029ENSMUST00000175677ENSMUST00000176091ENSMUST00000176310
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036B_0001ENSDARG00000025187ENSDART00000030646ENSDART00000111763ENSDARG00000039304ENSDART00000057432CIL_00036B_0002ENSG00000126778ENST00000247182ENST00000553535ENST00000554986ENSG00000179008ENST00000321731ENST00000555476ENST00000556799ENST00000557138ENSG00000184302ENST00000327720ENSG00000241354ENST00000489560ENSG00000244756ENST00000492636ENSG00000258670ENST00000557618ENSG00000258764ENST00000557593ENSG00000258952ENST00000555871CIL_00036B_0003ENSMUSG00000021098ENSMUST00000044000ENSMUST00000110489ENSMUST00000131033ENSMUST00000132016ENSMUST00000132901ENSMUST00000136075ENSMUST00000143960ENSMUSG00000021099ENSMUST00000021519ENSMUSG00000051367ENSMUST00000050029ENSMUST00000176091ENSMUST00000176310
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000025187 ENSDART00000030646 N/A N/A N/A 0.487±0.22 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000111763 N/A N/A N/A 0.312±0.08 N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A N/A
ENSDARG00000039304 ENSDART00000057432 N/A N/A N/A 0.469±0.22 N/A N/A 0.037±0.00 1.198±0.70 N/A N/A 10.202±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126778 ENST00000247182 0.685±0.00 N/A N/A 0.045±0.01 0.558±0.43 N/A N/A N/A 0.239±0.00 0.612±0.34 4.117±2.89 0.389±0.24 0.025±0.01 0.622±0.31
ENST00000553535 0.412±0.00 0.213±0.00 N/A 0.089±0.08 3.272±0.00 0.067±0.00 0.021±0.00 N/A N/A 1.619±0.00 6.749±5.43 0.363±0.32 0.022±0.02 1.201±0.00
ENST00000554986 1.292±0.00 0.060±0.00 N/A N/A 1.107±0.73 N/A 0.015±0.00 0.083±0.00 N/A 1.200±0.00 5.405±3.54 0.683±0.78 0.045±0.01 2.000±1.04
ENST00000555627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000179008 ENST00000321731 N/A 0.023±0.00 N/A N/A 0.041±0.02 0.012±0.00 N/A N/A N/A N/A N/A 0.051±0.04 N/A 2.551±0.32
ENST00000498565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555476 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.197±0.00 0.019±0.00 N/A 7.635±0.00
ENST00000556799 N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A N/A N/A N/A N/A 0.072±0.00 N/A
ENST00000557138 0.048±0.00 N/A N/A 0.006±0.00 N/A 0.090±0.00 N/A N/A N/A N/A 0.238±0.09 N/A N/A N/A
ENSG00000184302 ENST00000327720 0.006±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.372±0.00 N/A N/A 0.061±0.00
ENSG00000241354 ENST00000489560 N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A 0.207±0.00 N/A N/A 0.784±0.71 N/A N/A
ENSG00000244756 ENST00000492636 0.410±0.00 0.873±0.00 N/A 0.259±0.00 0.439±0.00 0.235±0.00 0.229±0.00 0.188±0.00 0.166±0.00 0.539±0.00 0.275±0.00 0.525±0.40 N/A 0.167±0.00
ENSG00000258670 ENST00000557618 0.340±0.00 0.815±0.00 N/A 0.687±0.00 0.478±0.00 0.228±0.00 0.160±0.06 0.425±0.00 0.071±0.00 0.479±0.00 0.012±0.00 0.097±0.06 N/A 0.295±0.16
ENSG00000258764 ENST00000557593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.306±0.00
ENSG00000258952 ENST00000555871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.574±0.00 0.094±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021098 ENSMUST00000044000 N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.03 N/A N/A N/A 0.036±0.00 0.805±0.00
ENSMUST00000110489 N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A 0.038±0.01 0.049±0.00 N/A N/A
ENSMUST00000130635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131033 0.090±0.00 N/A N/A 0.865±0.21 0.165±0.12 N/A 0.023±0.00 0.040±0.00 0.244±0.08 N/A 0.034±0.02 0.112±0.01 0.499±0.48 0.797±0.11
ENSMUST00000132016 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENSMUST00000132067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132901 N/A 1.458±0.00 N/A N/A N/A N/A 0.065±0.00 N/A N/A N/A 0.048±0.02 N/A N/A 2.535±0.00
ENSMUST00000136075 0.067±0.00 N/A N/A 0.607±0.01 0.054±0.02 N/A 0.016±0.00 0.024±0.00 0.147±0.06 N/A N/A 0.036±0.00 0.084±0.00 N/A
ENSMUST00000143960 N/A N/A N/A 2.369±0.00 N/A N/A 0.115±0.00 N/A N/A N/A 0.102±0.04 0.239±0.01 0.620±0.40 N/A
ENSMUSG00000021099 ENSMUST00000021519 N/A N/A N/A 0.384±0.10 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051367 ENSMUST00000050029 2.302±1.44 0.984±0.44 0.521±0.00 0.120±0.08 1.790±0.75 0.016±0.00 0.222±0.07 0.210±0.04 0.050±0.07 1.455±0.17 15.376±2.72 0.287±0.21 0.042±0.04 0.321±0.14
ENSMUST00000175677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.05 0.166±0.06 N/A
ENSMUST00000176310 N/A N/A N/A N/A 1.163±0.00 N/A N/A N/A 0.021±0.00 N/A 12.382±0.00 N/A N/A N/A

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