C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sodium channel, voltage-gated, type II, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000041176 scn2b 7955 + 15:12916551-12940855 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000101293 scn2b-001 12916551-12940855 nonsense_mediated_decay
  ENSDART00000101294 scn2b-003 12916551-12939393 protein_coding
  ENSDART00000149064 scn2b-004 12916551-12935817 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyMuscleENSDART00000101293ENSDART00000101294
Transcript ID Brain Heart Kidney Muscle
ENSDART00000101293 27.340±13.56 0.501±0.25 0.089±0.00 0.623±0.00
ENSDART00000101294 N/A 1.727±0.00 0.427±0.00 0.803±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003MC CIL_0003MC_0001 CGP 15:12916551-12995382

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000149575 SCN2B sodium channel, voltage-gated, type II, beta subunit protein_coding Homo_sapiens
ENSMUSG00000070304 Scn2b sodium channel, voltage-gated, type II, beta protein_coding Mus_musculus

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